Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2442 ATGGGTCGGAGAAAATTAGCACTGAAGACCCTCCAGAATAGGAATGCTCGCATGGCACTGTTTGAGAGGAGGAAGAAGGGTTTATTCAAGAAAGCTTCTGAACTTTCCACACTCTGTGGAATCGATGCCTGTGTCATCATCTTCCCTCCTCCAGATTCTGAAAACCCTGATAACGTTGAAACCTTTCCTCAAGATCCCACTCAGGTGATTCGGAATATTCAACAGTATGACGCCAAGAAGAAGAAAAGCCCCGACAAACAGAGGAAGAACTACGATCTCTGTGAGTTCTTCAATGATAAGAAGAAGCAGGTTGAAGCTGAGACTTGCAGAGTCCGTGAACAGAGATTGAAGATGACATTTCCAAATCCAACCTCGGACGACAGCTTCGACAACCTGGGAGAGGATCAACTGAGGATGTTCATTGCTGCGCTGGATTCTAAGATTCAAGAATGCGATCAAACGATTGGGATGCTGAAAGCAAAGAAATCAGAGAATCCTCTGGTTTCAATGGATCATGATCATTGTTCAGTAATTCCTCTTTATGATGTTTCAGAGGAAACCCACCTGGATCTGGGTTTAGAGAATCTTGATTTGGACATGTTTTTGGGCTTAGAATGGGATCAGTTTGATCCCATTATAGTTTAG 645 0.4341 MGRRKLALKTLQNRNARMALFERRKKGLFKKASELSTLCGIDACVIIFPPPDSENPDNVETFPQDPTQVIRNIQQYDAKKKKSPDKQRKNYDLCEFFNDKKKQVEAETCRVREQRLKMTFPNPTSDDSFDNLGEDQLRMFIAALDSKIQECDQTIGMLKAKKSENPLVSMDHDHCSVIPLYDVSEETHLDLGLENLDLDMFLGLEWDQFDPIIV 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2442 214 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Lele06g2442 214 CDD MADS_SRF_like 2 53 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele06g2442 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele06g2442 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele06g2442 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
Lele06g2442 214 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Lele06g2442 214 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Lele06g2442 214 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Lele06g2442 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2442 Lele-ChrLele06 32121351 32121995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2442 1 150 Type I MADS-box Gene Family AT5G55690 29.605 3.85e-15 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele06g2442 SRF-TF 1.1e-16 No_clan