Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2426 ATGGGTGACTACTATGACTGCAATAAAGATGATGACTGCAGTAAGCCTTGTGGGGTATACTGTGGAGGAGTTGGCAAGGACTGTCCTCAATGCCTTGAGAATAAGTGTGTCTGCAACTTTGCCTGCGACCCCGACGACACTCAATCTCTTGCTTCGTTTTATGGATCAGAGTCCGCTGAAGGAAAAGGTTTCAGCTTTCTTCTCTATCGGAAAATCCCATTTCGTTTTCTCCTAGTCTCTTTCCCTGATCTTTTCATGTACTTTGGTTTGAGTTTCAACTTCACTAGAGTTTTTCATGAAATGGATGGAGCAAATAGATTATCTCCCAATAAATTTGTACAGTGTCGGATATGTCATGATGAGGATGAAGACTCCAACATGGAGACTCCTTGTTCTTGTAGTGGCAGTTTGAAGTATGCACATCGAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTATCTGTGAGATTTGCCAACAGCAATTCAAGCATGGTTATACAGCGCCGCCTCCACTATTCCATTATGGCAGTTCCCCATTGAATTTTAGAGGTAACTGGGAGATATCCAGAAGGGATCTGCAAAATCATCAGTTCATAGAAATGTTTGCTGCTAATCGCGAATTCTCAGACACTGACGAGGAATACTCAGTACCCTCAACAGGGAGTCTGGTCTGCTTTCGCGTAGTTGCAATTATTTTTATCGCTCTTTTTGTTTTACGCCATACCCTTCCGATTATACTTAGTGGAGCAGGGGAATACTCGTTGACTCTTTATATGTTACTGGTTATGAGAACAATTGCAATACTACTACCTGTCTGTATAATGGTTAAGGCATTTACTATTATCCAACGGCGACGATACCAGGATCATTACTCCTCTATTCTGCAACATGAGGAAAGTGAATTGGAACAGCCTCAGTCTCGTGTCATTCATAATTTGATAACTCTACTTAATTTGTGCTCTGATTTTTTTTTTTGGTCAACCTCGGATGAAGATTTCGCTAGGGATACAGTGAAGGGGCGTGTTGAGATGAAGTATAATTTTTTTAAACAACTGATGGTAACATTGTGTAATGTAACTAAGATGACAATTTTAAGTAGATCAGAAATCCGGATATTTTATAACATCACGACACCTCGATTTAAGACAAACATGAGCAAGCAATCCAAATTATAA 1182 0.3993 MGDYYDCNKDDDCSKPCGVYCGGVGKDCPQCLENKCVCNFACDPDDTQSLASFYGSESAEGKGFSFLLYRKIPFRFLLVSFPDLFMYFGLSFNFTRVFHEMDGANRLSPNKFVQCRICHDEDEDSNMETPCSCSGSLKYAHRKCVQRWCNEKGDTICEICQQQFKHGYTAPPPLFHYGSSPLNFRGNWEISRRDLQNHQFIEMFAANREFSDTDEEYSVPSTGSLVCFRVVAIIFIALFVLRHTLPIILSGAGEYSLTLYMLLVMRTIAILLPVCIMVKAFTIIQRRRYQDHYSSILQHEESELEQPQSRVIHNLITLLNLCSDFFFWSTSDEDFARDTVKGRVEMKYNFFKQLMVTLCNVTKMTILSRSEIRIFYNITTPRFKTNMSKQSKL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2426 393 ProSiteProfiles Zinc finger RING-CH-type profile. 107 167 IPR011016 GO:0008270
Lele06g2426 393 Pfam Protein of unknown function (DUF3675) 167 280 IPR022143 -
Lele06g2426 393 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 105 290 IPR033275 -
Lele06g2426 393 SUPERFAMILY RING/U-box 111 165 - -
Lele06g2426 393 CDD RING_CH-C4HC3_MARCH 115 161 - -
Lele06g2426 393 FunFam Zinc finger family protein 103 170 - -
Lele06g2426 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 170 IPR013083 -
Lele06g2426 393 SMART ringv_2 114 161 IPR011016 GO:0008270
Lele06g2426 393 Pfam RING-variant domain 115 160 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2426 Lele-ChrLele06 31976635 31983922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2426 100 161 C3H Transcription Factor Family AT2G37950 43.077 6.46e-08 50.8