Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2417 ATGAATAAAAAATTTGGAGGTGGAAGTAAGCCAACAGGGACGCCATCAATGGCTTGGTCCTCTGTTGTCGTTGTCTTCTCTCTTCTTGCTGGCGCCTCTATTGTTCATAATATCTATAAGCCTAATCTTTTGATGGAGCTGATGAGACCAAACAGAAAGTTGATGAGAAAGAATAATTATGTCTTAACTTTTGAAAAATTCAACATTTGGAAGGTGACCTCATCTTGCACTGAGTGTGACACTGGTTTAACCTTGAAACTTGTTCAAGTATCTAATTCCTCTAATGCTCGGAAGGAATTACTAGAGTTGACTAGTTTAGCAGTCTTTCCTTTAAGTTATAATAATGTGGAGTCTAGAAATGCTGTAGGAGAGAGAACAACACGAACAAATGAAAGGAAGGATGAAGATGGCCGGAAAACCGGAGGGAAAAGTGTGGAGAAGAGGAGGATTGGTCAGCGTACACTCCTCGGAGACAGAAGATGGCATCCCAATGGACTCGTTCGCCCTCCGTTTCCAATCCCATTTTCAAAATCTCACACACTCACTTCAATCTCATCCAACGGTCACTATTACTTCTCGTTTTTCATACTATATATTCCCAATTTTCCTCTTCCTCTCTTCCCTCTCTTCCCTCTCTTCCCTTCCTCTCCTCCACATCTCTCTCCATCCCTCGGGAATCCTTCAGATAGCAGAAGATGGCAGATACTGAGGATATTCAACCCCTTGTCTGTGATAATGGGACAGGAATGGTCAAGTAAGTCTAAAATTACCCATTGCAATGTTCAGGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAGGATGCATATGTTGGTGATGAGGCACAATCTAAGAGGGGTATTCTGACTCTCAAGTACCCAATTGAGCATGGAATTGTTAGCAACTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTTGCCCCAGAAGAGCACCCAGTTCTTTTAACTGAGGCTCCACTTAATCCCAAGGCTAACCGGGAGAAGATGACTCAAATTATGTTTGAGACTTTTAACACCCCTGCTATGTATGTAGCCATTCAAGCTGTTCTTTCACTGTATGCTAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACAGTTCCTATCTATGAGGGTTATGCTCTCCCTCATGCCATCCTTCGTCTTGACCTGGCTGGTCGTGACCTCACTGAATACATGATGAAAATTCTGACTGAACGTGGGTATTCTTTTACCACCTCAGCAGAGCGGGAAATTGTTAGAGATGTGAAGGAAAAGCTAGCTTACATTGCCCTTGACTATGAGCTAGAGCTAGAGACATCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGTCAGGTCATCACTATTGGTGCTGAACGTTTCAGGTGTCCAGAGGTTTTGTACCAACCATCTTTTATTGGAATGGAAGCAGCAGGCATTCATGAGACAACGTACAACTCCATTATGAAGTGTGACGTCGACATTAGGAAAGACTTGTATGGTAACATTGTCCTCTCAGGAGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCTCTGCGTTAGCCCCAAGTAGCATGAAGATCAAGGTGGTTGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGGGGTTCAATTTTGGCATCTCTGAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGACGAATCTGGACCATCCATTGTGCATAGGAAATGCTTCTAA 1860 0.4446 MNKKFGGGSKPTGTPSMAWSSVVVVFSLLAGASIVHNIYKPNLLMELMRPNRKLMRKNNYVLTFEKFNIWKVTSSCTECDTGLTLKLVQVSNSSNARKELLELTSLAVFPLSYNNVESRNAVGERTTRTNERKDEDGRKTGGKSVEKRRIGQRTLLGDRRWHPNGLVRPPFPIPFSKSHTLTSISSNGHYYFSFFILYIPNFPLPLFPLFPLFPSSPPHLSPSLGNPSDSRRWQILRIFNPLSVIMGQEWSSKSKITHCNVQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYMMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYELELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2417 619 FunFam Actin, alpha skeletal muscle 502 572 - -
Lele06g2417 619 ProSitePatterns Actins signature 2. 600 608 IPR004001 -
Lele06g2417 619 SUPERFAMILY Actin-like ATPase domain 391 619 IPR043129 -
Lele06g2417 619 FunFam Actin, alpha skeletal muscle 254 402 - -
Lele06g2417 619 Gene3D - 382 582 - -
Lele06g2417 619 CDD NBD_sugar-kinase_HSP70_actin 318 425 - -
Lele06g2417 619 FunFam Actin, alpha skeletal muscle 573 619 - -
Lele06g2417 619 Gene3D Actin; Chain A, domain 4 424 515 - -
Lele06g2417 619 Gene3D - 259 613 - -
Lele06g2417 619 MobiDBLite consensus disorder prediction 120 146 - -
Lele06g2417 619 SMART actin_3 259 619 IPR004000 -
Lele06g2417 619 MobiDBLite consensus disorder prediction 124 146 - -
Lele06g2417 619 Pfam Actin 259 619 IPR004000 -
Lele06g2417 619 ProSitePatterns Actins signature 1. 297 307 IPR004001 -
Lele06g2417 619 Pfam Domain of unknown function (DUF4516) 10 43 IPR027858 GO:0034551
Lele06g2417 619 SUPERFAMILY Actin-like ATPase domain 259 397 IPR043129 -
Lele06g2417 619 FunFam Actin, muscle 424 515 - -
Lele06g2417 619 PRINTS Actin signature 270 279 IPR004000 -
Lele06g2417 619 PRINTS Actin signature 480 496 IPR004000 -
Lele06g2417 619 PRINTS Actin signature 384 403 IPR004000 -
Lele06g2417 619 PRINTS Actin signature 359 372 IPR004000 -
Lele06g2417 619 PRINTS Actin signature 305 327 IPR004000 -
Lele06g2417 619 PRINTS Actin signature 293 304 IPR004000 -
Lele06g2417 619 ProSitePatterns Actins and actin-related proteins signature. 348 360 IPR020902 -
Lele06g2417 619 PANTHER ACTIN 263 612 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2417 Lele-ChrLele06 31871600 31879961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2417 261 619 Cytoskeleton Gene Families AT3G12110 96.100 0.0 724