Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2366 ATGGAAGAAGAAGATCAGCTTCAACAGCAACCACGAGAATCCATAGCATTTCCAATTCAAGGTATGAAGTCTGTGGTGGCCACAGTGAGTGGCTATCACGGAACAGAACGATTCAACCTTATCAAGTTGATTTCACATGCTGGTGCAAATTATGTTGGCGCAATGTCTCAATCGATCACGCACCTGATTTGTTGGCGATTTGAAGGAAAGAAATATGATCTTGCTCGGAAGTTCAGAACAGTTATAATAAATCACCAGTGGATTGAAGACTGTTTAAAGCAAGGAAGGCGTGTTCCAGAGGAGCCTTATAGATTGAAAAGTGGAGAAGAGGTGGGACCAATATTGCTGCAAGTTCCACTTATTGTTCGGGCGAGTAGCTTGACTAAGAATAAAGTGATTAAATATGGATCATATGACATTGTCTCCAAAAGTCAAACAACTGGCATCAGTTCTGGAGCTCCTGGAAATTCTGTCAAGGAAGATTCCTATTTAACTAATGAGGAGGAGCCAATAACTTTTTCTTCCAGACGGTCAAGGACAGAAAAAAGGAAGATCTCCAATAGTAATGGGGTGGCTACTTATGCTGGTCCTTCTCGTCGCAGAAGAAGGCTTGTGAAAAGGAATGTTCAAGAAGTTTCAGCTCCTTTACTTGATTTGAATTCTGAGGAGTATCTTAGCAGAATGGATACATTAAATACTGATGCTGTAGCTTCCACTAGCCTTTCTGGTGGTGTCTCTACTGATATTATTTTAGAAAATAGAGAAGGATCAGATACTGACTCATATAATCAAAACATAGCTATCAATGCAGTACCAAATTCCACTGGACAAATCAATGTTTCAAGTAATTTATCAAGTTCAAGAATTTCAACTTTATGCGTACAAGATGACTCGCCTACTGCAGAGCAAATCTCAGTAGAAGAGTGTTCTGAAATGTCCGCAGATGATATTCAGGATGATCATGTGGCTGACTTGCCTACGTCGACAGACTTGTCATGTGTCATATGTTTGACGGAATTCAGCTCAACGCGGGGGGTTTTGCCATGTGGACATAGGTTTTGTTATTCTTGTATCCAGAGTTGGGTCGATCACAGGACTACAATGGGAAAAATCTCAACTTGTCCCTTGTGCAAGTTAAGGTTTGACAACATCATTAAATATGAGGATTTGGCCGTGGATCAAAAGATATATTCCCAAACAATCCCATGTGGCATTCCAATCTCAGATATTATTTTACTTATGGATCGAACACAACCAAATTATGGTTTTGAGTCCTCACAGACAGGTGCTTGTGTTGTTTGCCGGGGGCGAGAACCTGAGGATCTGCTCATGAGTTGCCATCTTTGCCACATTCGACAAATCCATTCCTATTGCTTGGATCCTCCTTTATTGCCATGGACATGCAATCACTGTAAGGATCTTCAGATGCTTTATCATAATAATTCACATTAG 1452 0.4063 MEEEDQLQQQPRESIAFPIQGMKSVVATVSGYHGTERFNLIKLISHAGANYVGAMSQSITHLICWRFEGKKYDLARKFRTVIINHQWIEDCLKQGRRVPEEPYRLKSGEEVGPILLQVPLIVRASSLTKNKVIKYGSYDIVSKSQTTGISSGAPGNSVKEDSYLTNEEEPITFSSRRSRTEKRKISNSNGVATYAGPSRRRRRLVKRNVQEVSAPLLDLNSEEYLSRMDTLNTDAVASTSLSGGVSTDIILENREGSDTDSYNQNIAINAVPNSTGQINVSSNLSSSRISTLCVQDDSPTAEQISVEECSEMSADDIQDDHVADLPTSTDLSCVICLTEFSSTRGVLPCGHRFCYSCIQSWVDHRTTMGKISTCPLCKLRFDNIIKYEDLAVDQKIYSQTIPCGIPISDIILLMDRTQPNYGFESSQTGACVVCRGREPEDLLMSCHLCHIRQIHSYCLDPPLLPWTCNHCKDLQMLYHNNSH 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2366 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 482 IPR013083 -
Lele06g2366 483 MobiDBLite consensus disorder prediction 162 184 - -
Lele06g2366 483 ProSiteProfiles BRCT domain profile. 14 105 IPR001357 -
Lele06g2366 483 SUPERFAMILY RING/U-box 320 385 - -
Lele06g2366 483 SUPERFAMILY BRCT domain 19 106 IPR036420 -
Lele06g2366 483 Pfam Ring finger domain 332 378 IPR001841 -
Lele06g2366 483 Gene3D BRCT domain 19 110 IPR036420 -
Lele06g2366 483 MobiDBLite consensus disorder prediction 146 161 - -
Lele06g2366 483 SUPERFAMILY FYVE/PHD zinc finger 421 473 IPR011011 -
Lele06g2366 483 ProSitePatterns Zinc finger RING-type signature. 349 358 IPR017907 -
Lele06g2366 483 Pfam twin BRCT domain 25 87 IPR001357 -
Lele06g2366 483 SMART BRCT_7 20 95 IPR001357 -
Lele06g2366 483 CDD RING-HC 333 377 - -
Lele06g2366 483 PANTHER F5A8.9 PROTEIN 157 481 - -
Lele06g2366 483 SMART ring_2 333 377 IPR001841 -
Lele06g2366 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 402 IPR013083 -
Lele06g2366 483 MobiDBLite consensus disorder prediction 146 199 - -
Lele06g2366 483 ProSiteProfiles Zinc finger RING-type profile. 333 378 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2366 Lele-ChrLele06 31360891 31365428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2366 55 111 Core DNA Replication Machinery Family AT4G02110 44.828 1.28e-11 65.5