LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g2336	ATGGTTCAAGGAACTGATTTAGTTGCCATTGGGGTCTCTGTTGGTTTGGCCTGTGGAATTTTGATAGCTTGTCTCATATGTTTGGTCATAAAGTGGTATAAGAGGCATTCTCATCTTAGACGTTGTGCAAATGAGCGTAGTCTAACAACACTTCCTATACGCACAAATGGATTAGAAACAAGCACTGACTTCAGTGCTTCTCTTACAAGCTCCATACCTGCTCCAATGTCAGAAAATCTTCAGAAAGATTCCCATTTCTCTTGGTGGAAACGTTCAAAGAAAGATCAGTTTGCGTCCTCATCAGGAATTCTTAGATACTCATTCAAAGAAATTCAGAAGGCAACACAAAATTTCACAACTATCTTGGGAGAAGGATCATTTGGCACAGTTCATAAAGCAACAATGCCTACTGGCGAGGTAGTAGCTGTGAAGGTGCTTGGTTCTGATTCCAAACAAGGGGAGAAAGAATTCCAAACAGAGGTACTTTTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGATATTCTGTAGATAAAGGACAACGTATTTTGATTTACGAGTTCATGAGCAATGGAAGTCTGGAAAGGCTTATACATGGTGAAGAAAAGGTTTTAAGTTGGGATGAAAGGCTGCAAATTTCTGTTGATATTTCACATGGAATTGAATACCTTCATGAAGGAGCAGTCCCACCCGTCATACACCGTGATTTGAAATCTGCCAATATATTGTTAGATCACTCAATGAGAGCTAAGGTGGCTGATTTTGGGCTCTCGAAGGAGGAAATCTTTGATGGGCGAAATTCTGGCTTGAAAGGCACACATGGCTACATAGACCCATCATACATTTCCACTAACAAGTTCACAATGAAAAGTGACATTTACAGTTTCGGTATCATCATTTTCGAGCTCATCACTGCCATTCATCCTCGACAGAATTTGATGGAATACATTAACCTTGCTGCAATAGATCATGATGGTGTAGATGGAATACTTGACAAGAACCTGGTGGGAAAATGCAACATTGAAGAAGTGAGGAAGCTTGCAAAGATTGGACACAAGTGCTTGCACAAATCACCCAGGAAACGTCCTTCAATTGGTGAGGTTTCACAAGCTATATCCAGCATAAGACAGACACGACGCCTTTTAAAAGAAAACACCATGTCATTTGCTGCCTCTAGCTTTTCCAGAGCTCTGAACCGACTTGAGGATCAACAGGTTGAGTTAAGCAGGACAGCCACCATGGCCCACTAG	1260	0.4119	MVQGTDLVAIGVSVGLACGILIACLICLVIKWYKRHSHLRRCANERSLTTLPIRTNGLETSTDFSASLTSSIPAPMSENLQKDSHFSWWKRSKKDQFASSSGILRYSFKEIQKATQNFTTILGEGSFGTVHKATMPTGEVVAVKVLGSDSKQGEKEFQTEVLLLGRLHHRNLVNLLGYSVDKGQRILIYEFMSNGSLERLIHGEEKVLSWDERLQISVDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTHGYIDPSYISTNKFTMKSDIYSFGIIIFELITAIHPRQNLMEYINLAAIDHDGVDGILDKNLVGKCNIEEVRKLAKIGHKCLHKSPRKRPSIGEVSQAISSIRQTRRLLKENTMSFAASSFSRALNRLEDQQVELSRTATMAH	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g2336	419	SMART	serkin_6	116	384	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele06g2336	419	Gene3D	Transferase(Phosphotransferase) domain 1	192	399	-	-
	Lele06g2336	419	CDD	STKc_IRAK	122	373	-	-
	Lele06g2336	419	FunFam	serine/threonine-protein kinase PBS1-like	87	191	-	-
	Lele06g2336	419	ProSitePatterns	Protein kinases ATP-binding region signature.	122	144	IPR017441	GO:0005524
	Lele06g2336	419	ProSiteProfiles	Protein kinase domain profile.	116	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele06g2336	419	FunFam	Calcium/calmodulin-regulated receptor-like kinase 2	192	400	-	-
	Lele06g2336	419	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	235	247	IPR008271	GO:0004672\|GO:0006468
	Lele06g2336	419	Gene3D	Phosphorylase Kinase; domain 1	81	191	-	-
	Lele06g2336	419	SUPERFAMILY	Protein kinase-like (PK-like)	90	373	IPR011009	-
	Lele06g2336	419	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	9	388	-	-
	Lele06g2336	419	Pfam	Protein kinase domain	120	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g2336	Lele-ChrLele06	30935536	30940325	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g2336	107	417	Receptor kinase-like Gene Family	AT4G02010	38.788	1.26e-69	231

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-2	Lele06g2336		Pkinase	1.6e-47	CL0016