Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2326 ATGGGTTCTGTTTGTGGTTGTTTGAGTGTTGAGAATCTTGAAGATTATGTAAATCCAAATAGTTCTGTATATAGAAATTGCATGTGCTTCAGTTGCTTCGTACATAACTTTTTGAATGTGTATACAACAATATTTCGTAGGCGCGAAGTGCATTCCATTTCTTCATCTATCCAGGGGGCAACATCTATGACTTCTACAGCATCACTGGATAATTCCTTATCAGACATGTACCGTGCTCCTCCCCGGCCCTTGCCATATGATGCAGACCCCAGGTATTTTCTCTCACAACGTGATGGACTAGTTTCAAGACGTGAGAAGGGTTCAAGTCATTCAAATGAGGAATCACAACCTCTACGAAGTGATATAGATGTGGATTCAGAATCTTTGAATATGGGAGACAAATGGAATGAGTGTGCCTGTGAAAATGGATCAAAGGAATACCTTTCTAAGCCCTCACTAAGACTTTCATCAGCAAAATATACAACTGGAACTGGGGTGGTGTATGCATCATTAGAAGATGAAGATGTTTGTCCAACATGTCTTGAAGAATATACCCGAGAGAATCCAAAGATAATGACAAAATGCTCTCACCATTTTCATCTTGGTTGCATCTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTGTGTGGGAAGGAGATGGAATTTGATGAAACGCCATAA 684 0.402 MGSVCGCLSVENLEDYVNPNSSVYRNCMCFSCFVHNFLNVYTTIFRRREVHSISSSIQGATSMTSTASLDNSLSDMYRAPPRPLPYDADPRYFLSQRDGLVSRREKGSSHSNEESQPLRSDIDVDSESLNMGDKWNECACENGSKEYLSKPSLRLSSAKYTTGTGVVYASLEDEDVCPTCLEEYTRENPKIMTKCSHHFHLGCIYEWMERSENCPVCGKEMEFDETP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2326 227 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Lele06g2326 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Lele06g2326 227 SMART ring_2 177 217 IPR001841 -
Lele06g2326 227 MobiDBLite consensus disorder prediction 103 123 - -
Lele06g2326 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 225 IPR013083 -
Lele06g2326 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 56 225 - -
Lele06g2326 227 SUPERFAMILY RING/U-box 171 223 - -
Lele06g2326 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2326 Lele-ChrLele06 30791701 30797884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2326 1 227 C3H Transcription Factor Family AT5G15790 59.914 1.06e-93 272