Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2314 ATGGAGCAGGAACACGAAGAGCATGAAGTGTACGGAGGCGATATTCCCGACGATGCGGAGATGGACGCAGATTTCAGAGTTGAAGAAGATGAAGACCCAGAAGGAAACCAACATGACCCCAATCACTCCAATAAGGACTTGGAGGACATGAAGAAGAGGCTCAAGGAAATTGAGGAAGAAGCAAGTGCCCTTCGTGAAATGCAGGCTAAGGTTGAGAAAGAGATGGGTGCTGTTCAAGATTCAAATGGTTCCTCTGCAAGTCAAGCTGAGAAGGAGGAAGTGGATTCCCGGTCAATCTATGTTGGTAATGTTGACTATGGATGTACACCTGAAGAAGTCCAGCAACATTTTCAGTCTTGTGGAACTGTGAACAGAGTGACGATATTGACAGACAAATTTGGTCAACCAAAAGGATTCGCTTATGTTGAGTTTGTTGAGGTTGATGCCATTCAGAATGCTCTCTTGTTGAATGAATCAGAGCTGCATGGTCGTCAATTGAAGGTCTCTGCTAAGCGTACAAACGTTCCTGGAATGAAACAGTATCGTGGAAGAAGACCTATGGGTTTTCGACCTAGAATGCCTTACATGCCTTCTCCATTCTATCCTCCATATGGTGGTTATGGGAGGTTTCCGAGGTATAGGCGTCCGACACGTTTCAGGCCATACTAG 669 0.4559 MEQEHEEHEVYGGDIPDDAEMDADFRVEEDEDPEGNQHDPNHSNKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSNGSSASQAEKEEVDSRSIYVGNVDYGCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPMGFRPRMPYMPSPFYPPYGGYGRFPRYRRPTRFRPY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2314 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Lele06g2314 222 Gene3D - 34 170 IPR012677 -
Lele06g2314 222 Coils Coil 44 74 - -
Lele06g2314 222 MobiDBLite consensus disorder prediction 16 30 - -
Lele06g2314 222 SUPERFAMILY RNA-binding domain, RBD 87 199 IPR035979 GO:0003676
Lele06g2314 222 CDD RRM_II_PABPs 98 169 - -
Lele06g2314 222 MobiDBLite consensus disorder prediction 31 73 - -
Lele06g2314 222 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 20 205 - -
Lele06g2314 222 MobiDBLite consensus disorder prediction 1 95 - -
Lele06g2314 222 MobiDBLite consensus disorder prediction 1 15 - -
Lele06g2314 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 173 IPR000504 GO:0003723
Lele06g2314 222 SMART rrm1_1 98 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2314 Lele-ChrLele06 30670872 30679607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2314 98 169 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 4.82e-09 53.9