Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2310 ATGCCGGAGATGATGGCGGGGAATGTTGCAGCTAATTCCAACTTCAACGCCTCCGCCGGCGTTAATGGTGGTCATCAGTTCGGCGACACCACGCTCACCAAAGTGTTCGTTGGAGGATTGGCTTGGGAGACTCCCAAAGACGCCATGAGAGAGCATTTCCAGAAGTACGGCGAGATCCTAGAGGCCGTTATTATCTCTGATAAGGCCACCGGCAGATCCAAGGGATATGGCTTCGTGACCTTTAAGGAAGCTGAAGCCGCTAAGAAGGCTTGTGAGGATCCTACGCCGATCATCAATGGCCGCCGAGCCAACTGCAATCTGGCTTCGCTCGGCGCTCGGCGCCCTAGGGCCACCAACACTTCACCGCCTCGTCAACAAGGATCGAACGGCGGAGGACCAAGGAACGCCCAAAGCGCCCCGCACCCGCCAGCCAATCACATCCCGTGGTATTATCCGGTGGGGACCCCTGCTTCACATTTCCATCACCACCACCATCAACCTGTTCCTCTCTATGGGTACCCCCAAACGTACATTCCAACTGACATAAATTACAATCAGAAGCTAAGCTACACTGGCGTTGGGCCCTACATGAATGGTTACTACTCTCCAATGTACCCGAGCCAGGCTATGGTGGGTGGGAACACATTGATGCCGATGTACCCTCTTTATCAGTACCATCAAACGCACACGATGGGCCTTCCTGCTCACATATTCCAGCCAACCACAGCGGGGCACGTGGCCATCATTTCGAAGCCCGCGTCCATCACTCCCAACACAGGTGCGTCACATGGTAACATGCCCAACCCCAACCCCAGTCAAATGTCTGTAAGCAGCAACACGAATCATTGTGGTCACGTGACACTGGATCGTGGTTGA 876 0.5468 MPEMMAGNVAANSNFNASAGVNGGHQFGDTTLTKVFVGGLAWETPKDAMREHFQKYGEILEAVIISDKATGRSKGYGFVTFKEAEAAKKACEDPTPIINGRRANCNLASLGARRPRATNTSPPRQQGSNGGGPRNAQSAPHPPANHIPWYYPVGTPASHFHHHHHQPVPLYGYPQTYIPTDINYNQKLSYTGVGPYMNGYYSPMYPSQAMVGGNTLMPMYPLYQYHQTHTMGLPAHIFQPTTAGHVAIISKPASITPNTGASHGNMPNPNPSQMSVSSNTNHCGHVTLDRG 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2310 291 Gene3D - 28 141 IPR012677 -
Lele06g2310 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 92 IPR000504 GO:0003723
Lele06g2310 291 FunFam Putative RNA-binding protein ARP1 27 116 - -
Lele06g2310 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 110 IPR000504 GO:0003723
Lele06g2310 291 SMART rrm1_1 34 106 IPR000504 GO:0003723
Lele06g2310 291 MobiDBLite consensus disorder prediction 110 145 - -
Lele06g2310 291 MobiDBLite consensus disorder prediction 257 291 - -
Lele06g2310 291 MobiDBLite consensus disorder prediction 113 135 - -
Lele06g2310 291 MobiDBLite consensus disorder prediction 257 285 - -
Lele06g2310 291 SUPERFAMILY RNA-binding domain, RBD 30 135 IPR035979 GO:0003676
Lele06g2310 291 CDD RRM_RBM24_RBM38_like 33 108 - -
Lele06g2310 291 PANTHER BOULE-RELATED 15 274 IPR037366 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2310 Lele-ChrLele06 30578746 30581327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2310 29 109 C2H2 Transcription Factor Family AT2G19380 41.975 4.96e-16 76.3