Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2254 ATGGCCACCTCCCAGCATCGCTGTGTTTTTGTTGGGAATATACCATATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTAGTATCATTCAGATTAGTCATCGATAGAGAAACTGGAAAGCCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTCTGAGTGCCCGTCGCAACCTTCAGGGTTATGAGATTAATGGGCGGCAGTTGCGTGTTGATTTTGCTGAAAATGACAAAGGTGCTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGATTGGCAGCAAATGTTGACCCTCAGAAACAAGTAACCGGGCCAGTTGTTCATGGTGAAGCTGCCCCCCACCAACCTATTGGTCTTCATATTGCTATAACAGCTGCAACTGTCATGGCAGCAGCTCTAGGAGGGCCTCAATCTGGCATCCAGTCAAGTCAAAATGGTTTGCAGGTTCAGTCAGGATTGGCACATGACCCTTTAACTTTGCATCTGGCCAGACTATCTAGGAATCAGCTGACTGAGATTATCTCTGATCTCAAGGCAATGGCTACACATAACAAGGAATTAGCTCGCCAGTTGTTACTTTCTAGACCGCAGTTGCCTAAGGCTCTTTTTCAGGCACAGTTAATGCTAGGAATGGTGACCCCACAAGTGTTACAAATGCCAAACCTTAGGCAAGTTTCAGGTGAAACCTCACAGCCTCCAGTTGATGAAAGCCAGCTACGTCAGTCGGCAGTGCTTCAATCACTATCTGGGCTGCCTTCTCATGCACAGATCAAGTTGCAATCTGGCTTGATGCCCAATATTCAAGAAACTCAAGCCAGTGCTTTACATCATAATTCGTTGGTTCCTAATCAATTAGCAGCTGCTCACCCAAAGCCTCCTTTGAAGCATCAAATGCAGCTTCCTCAACATCCAAGCAAGCCGCTGGTACAGCTGGGCACAATGCCAGGGCATTCTAGTTCATTGCTTCCTTCTTTGCGCCCCCAGTCTCAGTTCAGTTTGCCTGTTAGATCAACAAATCAGCTGGCAACTTCAACTTCTCTGAATCAGCAAATGCATTTGCTACAACAATCAGGGCAGATTGGGAACTCAAGTGTAGGACAAAATATTCGGATGATTCGTCCAGATTCTGGCTTTCAGCCTGGCCTGTCCATATCATCAGGTATTCCTCAGTCAATTGGTAGGGAAACTGACAGATCAGCTAAAGTTGTTGAAGATTCTAATTGGGCCAAGACAAGTAGTACTTATACAAACATTGCTCATGGATTAGGGGAGAAAACTAATGAGCCTTCAGAACCATTTAGCCGCCCATCAAAGCTGATTAAATTGGATGATGGAAGGAGCTCTTCTTTCCCTGGAGGAGTCAGAAATGTACCTGTTTTGAAGGGATCTTCCCAAGTTCTTGGAAGTGTGCCATTGCCTGTAAATGCAACTTCCAAATCAGAAGCGCAACAATCCTCTCAGGCTCAGCTTCCACCTGACATGGAATCGGTGTTACTGCAACAAGTGTTGAGTCTAACTCCGGAGCAATTGAGTTCCTTGCCACCGGAGCAGCAACAGCAGGTTTTACAGCTTCAGCAAGCTCTCCGGCGAGACCAGACCCAGCCCTCTTAG 1641 0.4668 MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLAANVDPQKQVTGPVVHGEAAPHQPIGLHIAITAATVMAAALGGPQSGIQSSQNGLQVQSGLAHDPLTLHLARLSRNQLTEIISDLKAMATHNKELARQLLLSRPQLPKALFQAQLMLGMVTPQVLQMPNLRQVSGETSQPPVDESQLRQSAVLQSLSGLPSHAQIKLQSGLMPNIQETQASALHHNSLVPNQLAAAHPKPPLKHQMQLPQHPSKPLVQLGTMPGHSSSLLPSLRPQSQFSLPVRSTNQLATSTSLNQQMHLLQQSGQIGNSSVGQNIRMIRPDSGFQPGLSISSGIPQSIGRETDRSAKVVEDSNWAKTSSTYTNIAHGLGEKTNEPSEPFSRPSKLIKLDDGRSSSFPGGVRNVPVLKGSSQVLGSVPLPVNATSKSEAQQSSQAQLPPDMESVLLQQVLSLTPEQLSSLPPEQQQQVLQLQQALRRDQTQPS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2254 546 Gene3D - 498 545 IPR038192 -
Lele06g2254 546 MobiDBLite consensus disorder prediction 386 405 - -
Lele06g2254 546 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Lele06g2254 546 FunFam Cleavage stimulating factor 64 1 116 - -
Lele06g2254 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Lele06g2254 546 FunFam Cleavage stimulating factor 64 155 230 - -
Lele06g2254 546 Pfam Transcription termination and cleavage factor C-terminal 508 540 IPR026896 GO:0031124
Lele06g2254 546 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 542 - -
Lele06g2254 546 MobiDBLite consensus disorder prediction 429 466 - -
Lele06g2254 546 Pfam Hinge domain of cleavage stimulation factor subunit 2 162 228 IPR025742 -
Lele06g2254 546 MobiDBLite consensus disorder prediction 519 546 - -
Lele06g2254 546 Gene3D - 1 111 IPR012677 -
Lele06g2254 546 Gene3D - 154 230 - -
Lele06g2254 546 CDD RRM_CSTF2_CSTF2T 9 83 - -
Lele06g2254 546 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lele06g2254 546 MobiDBLite consensus disorder prediction 83 109 - -
Lele06g2254 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lele06g2254 546 MobiDBLite consensus disorder prediction 389 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2254 Lele-ChrLele06 29703797 29710154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2254 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.67e-07 52.4