Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2215 ATGGCGGGAGCTACAGGCCGAGCCCTTATCACTCTCTCTCTAAACTCCAACCTCTCTACGTTTGCACGCTTATCTCATGGCCACACCATTCCATTTCTCAAACTGACTGCAAGACCCGGTAGGGTTTTTCTAGGTTTTAGGCACCTCTGCTCTGTCACCTCCACCGCCACCACGCCCACCGTTCCCGACACGACGGAGTCCATTGATCCTGACCAAATCAAGCACTCAATTCTTCTTGAGAGACTCAGATTCAGGCACCTTAAGGACTCTGCTAACACCCCAGAAATCAAGACTTCAAGGAGATCAGTTGCTATCTCTGAGAAGGGTCGTGAGAATGAGGGGAAGAAGTCAGAGAAGAAGAAGTTGGTTGGAAGTTTTGAGGAGTTGGGCCTCAGCGATGAGGTAATGGGAGCCGTGAAGGAGATGAATATTGAGGTTCCTACTGAGATTCAGTGTATCGGCATCCCTGCTGTCTTGGAAGGGAAGAGTGTTGTTTTGGGATCCCATACTGGTTCTGGCAAGACTCTAGCTTACATGCTTCCCCTTGTTCAGTTGCTTAGACAGGATGAACAATTGAATGGATTACTTATGAAACCCAGGCGTCCCCGAGCTGTTGTGCTATGCCCCACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATCTATCAGCCACCATGCAAGATTAAGGTCTACAATGGTAAGTGGGGGTGGCCGTCTCAGGCCTCAGGAAGATTCATTAAATAACCCCATTGACTTGGTTGTTGGTACTCCGGGCAGAATTCTGCAACACATTGAGGAAGGCAACATGGTATATGGTGACATCAAATACATGGTGTTGGATGAGGCAGACACGATGTTTGATCGAGGTTTTGGTCCTGATATACGCAAGTTTATTGGCCCCCTAAAGAATCGTTCATTAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTTACTGCAACCATGACAAAGGCAGTGCAAAAGCTGGTTGATGAGGAGTTTCAAGGCATTGTGCATCTACGAACATCAACATTGCATAAAAAGATTGCTTCTGCTCGTCATGATTTTATTAAGCTGTCTGGTTCTGAAAACAAGCTGGAGGCATTACTACAGGTTCTGGAACCAAGCCTAGCAAAAGGGAATAGAGTGATGGTTTTCTGCAATACATTGGATTCTAGCCGTGCAGTGGATCATTTTCTCAGTGAAAATCAGATATCTACTGTCAATTACCATGGAGAGGTACCAGCAGAGCAAAGGGTTGAAAACCTCAAGAAGTTTAAAAGTGATGAAGATGATTGCCCTACACTAGTTTGCACGGACTTGGCTGCTAGGGGTCTGGATTTGGATGTCGATCATGTTATCATGTTTGATTTTCCCTTGAACTCTATTGATTACCTTCACCGAACTGGTAGAACAGCTCGTATGGGGGCAAAAGGAAAAGTAACTAGCTTAGTTGCAAAAAAAGACATAACCTTGGCTGCTCGAATAGAAGAAGCAGTAAGGAAGAATGAGAGCTTGGAGGCTATCAGTAAAGACAGTCTTAGGAGGGAAATTGCTAGGCCCCAAATAACTCAGCAGAAGGGAAAGAATACCAAATTGGTAAAGGTTTCCAGAACGAAAAGCACTTCTACTCTCCGTGCCCCTTCCAGAAAAACATCAAAGAAGCCCTCTGCATCAAAAGTATCTGAAAGTTCTTCTAGTGTTAACACTGGTTCTAGAAAAGCACCCAAACCATTAAAATCAGCAAAGGCAGGAGGGATTCAGGTTAAAAAATCTGTAAGATCTTCCAGTGCAAGTAGCCTGAAAAAAGCTTCGGTGGGTAAGAAGCAAACAAGTAAAAGAAACAGTGCTAACAAGTCATCAAATTCTAAACTGAGTGTTGTTGGTTTTAGGGGGCGGAGTTCCTCAAACAAGCAGGAATCAAAATTTTGA 1938 0.4458 MAGATGRALITLSLNSNLSTFARLSHGHTIPFLKLTARPGRVFLGFRHLCSVTSTATTPTVPDTTESIDPDQIKHSILLERLRFRHLKDSANTPEIKTSRRSVAISEKGRENEGKKSEKKKLVGSFEELGLSDEVMGAVKEMNIEVPTEIQCIGIPAVLEGKSVVLGSHTGSGKTLAYMLPLVQLLRQDEQLNGLLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARLRSTMVSGGGRLRPQEDSLNNPIDLVVGTPGRILQHIEEGNMVYGDIKYMVLDEADTMFDRGFGPDIRKFIGPLKNRSLKPDGLGFQTILVTATMTKAVQKLVDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLSENQISTVNYHGEVPAEQRVENLKKFKSDEDDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDITLAARIEEAVRKNESLEAISKDSLRREIARPQITQQKGKNTKLVKVSRTKSTSTLRAPSRKTSKKPSASKVSESSSSVNTGSRKAPKPLKSAKAGGIQVKKSVRSSSASSLKKASVGKKQTSKRNSANKSSNSKLSVVGFRGRSSSNKQESKF 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2215 645 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 342 IPR014001 -
Lele06g2215 645 SMART helicmild6 396 478 IPR001650 -
Lele06g2215 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 489 IPR027417 -
Lele06g2215 645 MobiDBLite consensus disorder prediction 93 119 - -
Lele06g2215 645 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 66 514 - -
Lele06g2215 645 Gene3D - 352 625 IPR027417 -
Lele06g2215 645 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 124 152 IPR014014 GO:0003724
Lele06g2215 645 MobiDBLite consensus disorder prediction 521 645 - -
Lele06g2215 645 SMART ultradead3 143 362 IPR014001 -
Lele06g2215 645 MobiDBLite consensus disorder prediction 521 576 - -
Lele06g2215 645 CDD DEADc 135 334 - -
Lele06g2215 645 Pfam Helicase conserved C-terminal domain 367 478 IPR001650 -
Lele06g2215 645 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 517 IPR001650 -
Lele06g2215 645 CDD SF2_C_DEAD 355 487 - -
Lele06g2215 645 Pfam DEAD/DEAH box helicase 148 331 IPR011545 GO:0003676|GO:0005524
Lele06g2215 645 Gene3D - 88 343 IPR027417 -
Lele06g2215 645 MobiDBLite consensus disorder prediction 592 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2215 Lele-ChrLele06 28150405 28161773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2215 123 500 Eukaryotic Initiation Factors Gene Family AT3G19760 28.721 4.89e-42 155