Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2178 ATGGGCTCTCACCAGGTTAAGCCATCTAGGCCTGTGGAGAGGTTTGAATTGCAAAATAAGTATGCCGGAGATGGTGAATTTGTTGCTCATAGACGATCCATGGGGCAGAAATTTGATCGTACGGACTATGGCCGGCAAAACCAGCGCGAACCCAGGAAGCATGAGGTTGAATCTAGTACTGGCAATGTTGTTCAAAGACAGGATGGTCACGTTGCTGGCGCAGAAAGAGTTAGTGTTAAGGGGAAATTGAATAACAGAGAGGGAAAGAAGGATGCTGTTCGTAATCATTCGGAGGTATCAAGGAAGTCTTTTGAAGATGAGATGGTTGATGGATGGCCCAAATGGCTAGTTGATAACGTTCCAAAGGAAGCATTGGATGGCTTGATTCCCAAGAGTGCGGAATCGTACATTATGATTAATAAGGTAGGGCAGGGAACTTATAGCAATGTTTATAAAGCTCGAGATCGAAACAGTGGAGAATTAGTGGCCCTCAAGAAGGTGCGCCTTGACACATCAAAGCCTGAATGCATTAAATTCATGGCTAGAGAAATTATGATATTGCGGAGATTGGATCATCCCAATGTAGTAAAACTCAAAGGATTGGCTACTTCAAGAATGCATTATAGTCTTTATCTCGTTTTTGACTTCATGCAAACAGATTTGGCTAGAATAGTTTCTCGTCCTGAAGATAGATTAACCGAACCACAGGTCAAGGCCTACATGCATCAATTGCTTTCAGGTCTGCAGCATTGCCATGACAGGGGCATTTTGCATAGAGATATCAAAGGATCAAACCTTTTGATTGATAAAAGTGGGATGCTTAAGATCGCAGATTTTGGGCTCGCCAATTATTATAATCCCAAACATAACCAGCCTCTCACAAGCAGGGTTGTGACACTATGGTACAGAGCTCCTGAGCTGTTGTTGGGTGCCACTGATTATGGAGTTGGTGTCGATTTATGGAGTGCTGGATGCCTCCTGGCAGAAATGTTTACAGGCCTTCCAATTATGCCTGGTAGAACAGAGGTGGAGCAACTTCATAGAATTTTTAGGCTATGTGGTACACCATCAGAGGGTTATTGGAAAAAATTCAAAGCTTCTGGGACTTTTAGGCCTCCAAAGTCTTATAGACCCTGCCTTGTAGAGACTTTCAAAGATCTCCCTTCTTCTTCTTTGGGTCTATTACGTACTCTGCTTGCCTTGGATCCTGCTTACCGTGGAACTGCATCTAAAGCTCTCCAAAATCAATTTTTCTATTCAAGTCCTTTGGCATGTGACCTTTCTGGTCTTCCTGTGATCAGCAATGAAGACGGGCAAGATCAAGCCGATGAACAAATCAAGCGCATGAATTCTAAAATTAGACGCTCGCGTACATTACTTGAGCGTCGTAGAAAGGGCCTGCAGGTTTCTGAAAAGCCAGCAGAACCCACTATATCTTCTAAAGAGGAATCAAGAAAGAATGCTGATATGTACGTCCCACGTGAAGAACCGGGTAGTGCAACCACAACCAATAGTACCTTATCAAGTTTGAATCCTACTGAGACAAAGGATTCTTCACCTATCTTCTCTCCAAATGTGTTCTCAGATAAAAAACTGCTTCTCAAAACACATTGTGATGATAATGATGGTAAAAACTTTGATAACTTTCCTCCTTTACCTAAGTTGAAATCACGTGCAGCTGCTGGGGGAGAAGATACTATGTCCAAGTTTCGTCCCGTTCGCAGGTCTTCTTCCACAAGAGATTTCAGATTCTCAAGACAAAGGGGCCGTTTACTCCTTGAAACAGAGGATCAGACTCCATAG 1803 0.4309 MGSHQVKPSRPVERFELQNKYAGDGEFVAHRRSMGQKFDRTDYGRQNQREPRKHEVESSTGNVVQRQDGHVAGAERVSVKGKLNNREGKKDAVRNHSEVSRKSFEDEMVDGWPKWLVDNVPKEALDGLIPKSAESYIMINKVGQGTYSNVYKARDRNSGELVALKKVRLDTSKPECIKFMAREIMILRRLDHPNVVKLKGLATSRMHYSLYLVFDFMQTDLARIVSRPEDRLTEPQVKAYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKSGMLKIADFGLANYYNPKHNQPLTSRVVTLWYRAPELLLGATDYGVGVDLWSAGCLLAEMFTGLPIMPGRTEVEQLHRIFRLCGTPSEGYWKKFKASGTFRPPKSYRPCLVETFKDLPSSSLGLLRTLLALDPAYRGTASKALQNQFFYSSPLACDLSGLPVISNEDGQDQADEQIKRMNSKIRRSRTLLERRRKGLQVSEKPAEPTISSKEESRKNADMYVPREEPGSATTTNSTLSSLNPTETKDSSPIFSPNVFSDKKLLLKTHCDDNDGKNFDNFPPLPKLKSRAAAGGEDTMSKFRPVRRSSSTRDFRFSRQRGRLLLETEDQTP 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2178 600 Pfam Protein kinase domain 138 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele06g2178 600 MobiDBLite consensus disorder prediction 26 98 - -
Lele06g2178 600 FunFam Putative serine/threonine-protein kinase 219 455 - -
Lele06g2178 600 FunFam probable serine/threonine-protein kinase At1g54610 123 218 - -
Lele06g2178 600 MobiDBLite consensus disorder prediction 497 522 - -
Lele06g2178 600 MobiDBLite consensus disorder prediction 80 98 - -
Lele06g2178 600 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Lele06g2178 600 SMART serkin_6 136 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele06g2178 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Lele06g2178 600 MobiDBLite consensus disorder prediction 26 59 - -
Lele06g2178 600 MobiDBLite consensus disorder prediction 460 492 - -
Lele06g2178 600 ProSiteProfiles Protein kinase domain profile. 136 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele06g2178 600 MobiDBLite consensus disorder prediction 460 522 - -
Lele06g2178 600 Gene3D Phosphorylase Kinase; domain 1 126 218 - -
Lele06g2178 600 MobiDBLite consensus disorder prediction 568 593 - -
Lele06g2178 600 SUPERFAMILY Protein kinase-like (PK-like) 132 423 IPR011009 -
Lele06g2178 600 MobiDBLite consensus disorder prediction 541 600 - -
Lele06g2178 600 Gene3D Transferase(Phosphotransferase) domain 1 219 457 - -
Lele06g2178 600 PANTHER CELL DIVISION PROTEIN KINASE 134 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2178 Lele-ChrLele06 27246620 27255998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2178 131 459 Core Cell Cycle Gene Families AT5G10270 42.651 1.87e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele06g2178 Pkinase 3.3e-68 CL0016