Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2167 ATGGCAGATCTTGCTAAGTACGGGAATGCCGACCGTGATATCGAACAGGCATTGATAGCTTTGAAAAAGGGTGCTCAGCTGCTTAAATATGGTCGCAAGGGAAAGCCCAAGTTTTGTCCATTTCGACTTTCCAATGATGAATCATCTTTAGTTTGGATATCAAGTAGCGGAGAAAGACGTCTGAAGCTATCTTCTGTCTTGAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTATTTACGTCCTGAGAAGGATTATCTGTCTTTTTCACTTATTTACAACAACGGAAAGCGATCCCTTGACTTGATTTGCAAGGATAAAGCTGAGGCAGAAGTTTGGATTGCTGGCCTCAAATCACTGCTCTCTTCTGGTCAAGGTGGCCGGTCCAAAATTGATGGATGGAGTGATGGGGGCCTTTGTCTTGATGATAACAGAGAATTGACTTCAAATCGGCCAAGTGGAAGTTCAGTTGGTACTTCCCAAAATATTAGCTCTCCTGAAGTTTCTTTTAGTCGTAATTCCAATTCTCCTCCGAAGTCCTTTGGTCCTGGGAATATTTATAATTCTGAAAGGTCATATGCACCATCTGATCCAACAACTATGCAAGTGAAAGGATCTGGTTCGGATGCTTTTCGTGTTAGTGTTTCAAGTGCCCCAAGTACATCTAGTCATGGGTCAGCACCAGATGACTGTGATGCTCTTGGGGATGTATACATATGGGGAGAGGTAATCTGTGAGAACATTGTGAAAGTTGGTGCCGATAGAAATGCCAACTATGTTAGCTCAAGGGCGGATTTGCTTCTACCTAGACCATTGGAGTCCAATGTAGTATTAGATGTACATCATATAGCCTGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAGTCCGGAGGACGACTTGGCCATGGTGTTGAGAAGAATGTGCTTCAACCCCATTTAATTGAAGCATTGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGTGAGTTCCATACCTGTGCTGTTACAATGGTTGGGGAATTATATACTTGGGGTGATGGTACTCATAATGCTGGTCTTCTTGGTCATGGCACTGATATTAGTCATTGGATACCAAAGAGAATTGCAGGCCCGCTGGAGGGACTTCAGGTTTCTTTAGTGTCTTGTGGTCCATGGCACACAGCCTTGGTAACTTCAAGTGGGCAGCTTTTTACATTTGGTGATGGAACTTTTGGTGTCTTGGGCCATGGAGATAGGGAAAATGTTTCTTATCCTAAGGAAGTTGAATCCTTATCTGGGCTGAGGACAATAGCTGTTGCATGTGGCGTGTGGCATACTGCAGCCGTGGTAGAAGTTATAGTAACGCAATCCAGTGCTAGTGTATCATCAGGTAAATTGTTTACCTGGGGTGATGGTGACAAAAATCGCCTTGGACATGGGGACAAGGAAGCCCGGCTGAAACCAACTTGTGTGCCTTCGCTTATTGACTACAATTTTTATAAAATTGCTTGTGGACACAGCTTGACTGTTGGCTTGACGACATCAGGACATGTTTTTACAATGGGTAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGGTGCCCTGCTTGGTTGAAGACAAGCTTGCTGGAGAATCTGTTGAAGAAATTGCATGTGGTGCATATCATATTGCAGTTTTAACATCAAAAAACGAAGTTTATACATGGGGAAAGGGTGCAAATGGGAGGTTGGGTCATGGAGATGTTGAAGACAGGAAAATACCAACTTTGGTTGAAGGTTTGAAGGATAGGCATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCAATATGCCTTCATAAATGGGTATCAGGTGCGGAACAGTCTCAGTGCTCTGCTTGTAGACAGACATTTGGATTCACTCGAAAGAGGCACAATTGTTATAATTGTGGACTCGTACACTGCCATTCATGCAGTTCAAGGAAAGCACTAAGAGCAGCTTTGGCTCCTAATCCTGGCAAGCCATATCGAGTTTGTGATTCTTGTTATGCAAAACTAAGCAAGGGAGCAGAAACTGGCAGTAATAATAGGAAGAATGTTATGCCACGTTTGTCTGGTGAAAACAAGGACAGGTTAGATAAGGCTGAGATAAGAGCGTCCAAGGTGGTTCCCTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAAGCAGCCAAACAGGGGAAGAAGCCTGATACATTTGCCCTAGTTCGCACCTTACAAGCGCCTTCAATGCTGCAACTGAAGGATGTGGTCTTGTCTACTGCAGCTGATCTAAGACAAACAGCTCCAAGACCGGTTCTTGCACCATCTGCAGTAAGTTACCGATCTGTGTCCCCTTTCTCTAGACGGCCAAGCCCCCCTCGTTCTGCTACACCTATTCCAACCACATCTGGACTTTCTTTCTCCAAAAGCATCGCTGACAGTTTAAAGAAAACAAATGAACTCTTGAATCAAGAAGTGGTGAAGCTACGTTCTCAGGTTGACAGTCTGAGGCAAAGATGTGAACGACAAGATTTGGAGCTTCAAAGTTCAACAAAGAAAACTCAGGAAGCTTTGGCACTTGTTGCTGAGGAGTCTGCTAAATGCAAAGCCGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTCCCTCCTGAAGCTAATGATGCTGAGAGCATAAGACCAACTTACCTAACAAATGGTTTGTGGTTAAATGGCATCCACTATCCTGACTCAAATGGGGAGAGCCACTCCCGAGCTGAGTCAGTCAGTGCCTCTAGCTTGGCTTCTGTAGGACTTGAATCATCTGTGTCAAATAGACTTGAGGGAAATTTATCTGGAGCATATGGAACTAATCTTTACCAGCAAAACCGGCAGCTTGTGACCTCCAATGGGATCAACGAACCCTCAGATGCTAAATTGCCAAATGGTGGCATGACTCCCACAAGCAACCATATGTCAGATACTGTTGATGGTAGGGATTCAGGACATATACAAGATGGAGAGGGTGGTTTGAGATCAAAGGATGGTGTGCTGGCTGCGAACAGTAGTCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTGTATATAACACTCATGGCCCTTAAGGATGGAACACGAGATCTAAAACGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAAGCAGAAACATGGTGGTCAGAGAATCGCGAGAAGGTATATGAAAGGTACAATGTTCGCAGCACTGACAAATCGTCAGGCCAAGCAACTCGGAAAGCAGAAGGTGCTGCTTCACCTGTTGCCCAATCTTAG 3360 0.4429 MADLAKYGNADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLVWISSSGERRLKLSSVLRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKAEAEVWIAGLKSLLSSGQGGRSKIDGWSDGGLCLDDNRELTSNRPSGSSVGTSQNISSPEVSFSRNSNSPPKSFGPGNIYNSERSYAPSDPTTMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVICENIVKVGADRNANYVSSRADLLLPRPLESNVVLDVHHIACGVKHAALVTRQGEIFTWGEESGGRLGHGVEKNVLQPHLIEALASTTVDFVACGEFHTCAVTMVGELYTWGDGTHNAGLLGHGTDISHWIPKRIAGPLEGLQVSLVSCGPWHTALVTSSGQLFTFGDGTFGVLGHGDRENVSYPKEVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPSLIDYNFYKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKVPCLVEDKLAGESVEEIACGAYHIAVLTSKNEVYTWGKGANGRLGHGDVEDRKIPTLVEGLKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQTFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLSKGAETGSNNRKNVMPRLSGENKDRLDKAEIRASKVVPSNMDLIKQLDSKAAKQGKKPDTFALVRTLQAPSMLQLKDVVLSTAADLRQTAPRPVLAPSAVSYRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVVKLRSQVDSLRQRCERQDLELQSSTKKTQEALALVAEESAKCKAAKEVIKSLTAQLKDLAERLPPEANDAESIRPTYLTNGLWLNGIHYPDSNGESHSRAESVSASSLASVGLESSVSNRLEGNLSGAYGTNLYQQNRQLVTSNGINEPSDAKLPNGGMTPTSNHMSDTVDGRDSGHIQDGEGGLRSKDGVLAANSSQIEAEWIEQYEPGVYITLMALKDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSTDKSSGQATRKAEGAASPVAQS 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2167 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 559 569 IPR000408 -
Lele06g2167 1119 Pfam Transcription factor BRX N-terminal domain 875 909 IPR027988 -
Lele06g2167 1119 Coils Coil 824 865 - -
Lele06g2167 1119 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Lele06g2167 1119 Gene3D - 462 637 IPR009091 -
Lele06g2167 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 444 454 IPR000408 -
Lele06g2167 1119 MobiDBLite consensus disorder prediction 1095 1119 - -
Lele06g2167 1119 FunFam Putative E3 ubiquitin-protein ligase HERC1 631 699 - -
Lele06g2167 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Lele06g2167 1119 MobiDBLite consensus disorder prediction 148 229 - -
Lele06g2167 1119 FunFam PH, RCC1 and FYVE domains-containing protein 1 459 630 - -
Lele06g2167 1119 MobiDBLite consensus disorder prediction 1008 1022 - -
Lele06g2167 1119 MobiDBLite consensus disorder prediction 147 230 - -
Lele06g2167 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Lele06g2167 1119 CDD PH_PLC_plant-like 12 124 - -
Lele06g2167 1119 ProSiteProfiles BRX domain profile. 1039 1094 IPR013591 -
Lele06g2167 1119 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 897 - -
Lele06g2167 1119 SUPERFAMILY RCC1/BLIP-II 236 626 IPR009091 -
Lele06g2167 1119 Gene3D - 185 461 IPR009091 -
Lele06g2167 1119 SUPERFAMILY PH domain-like 13 123 - -
Lele06g2167 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 405 454 IPR000408 -
Lele06g2167 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 351 401 IPR000408 -
Lele06g2167 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Lele06g2167 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Lele06g2167 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 299 347 IPR000408 -
Lele06g2167 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 468 515 IPR000408 -
Lele06g2167 1119 MobiDBLite consensus disorder prediction 982 1026 - -
Lele06g2167 1119 SUPERFAMILY FYVE/PHD zinc finger 625 695 IPR011011 -
Lele06g2167 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Lele06g2167 1119 MobiDBLite consensus disorder prediction 790 815 - -
Lele06g2167 1119 CDD FYVE_like_SF 634 687 - -
Lele06g2167 1119 Coils Coil 873 900 - -
Lele06g2167 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Lele06g2167 1119 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Lele06g2167 1119 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Lele06g2167 1119 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Lele06g2167 1119 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Lele06g2167 1119 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
Lele06g2167 1119 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Lele06g2167 1119 MobiDBLite consensus disorder prediction 982 1007 - -
Lele06g2167 1119 Pfam Transcription factor regulating root and shoot growth via Pin3 1038 1093 IPR013591 -
Lele06g2167 1119 SMART fyve_4 623 692 IPR000306 GO:0046872
Lele06g2167 1119 FunFam PH, RCC1 and FYVE domains-containing protein 1 208 458 - -
Lele06g2167 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Lele06g2167 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 697 IPR013083 -
Lele06g2167 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Lele06g2167 1119 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Lele06g2167 1119 Gene3D - 13 129 IPR011993 -
Lele06g2167 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Lele06g2167 1119 Pfam FYVE zinc finger 625 691 IPR000306 GO:0046872
Lele06g2167 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2167 Lele-ChrLele06 25408385 25416053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2167 1040 1110 Major Intrinsic Protein MIP AT1G31880 45.070 3.95e-14 73.6