Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2161 ATGATAATAAAATATGGGAAACCTATACCAAAAATTGGTTCACGTAGAAATGGACGTATTGGTTCACGTAAGAATGCGCGTAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTTAACAATACCATTGTGACTATTACAGATGTACGGGGTCAGGTGATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACAAGAAGGGGGACGCCTTTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGACAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATAAAGGGTCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGATGTAGGCCCCCTAAAAAAAGACGTGTGTAA 429 0.4359 MIIKYGKPIPKIGSRRNGRIGSRKNARKIPKGVIHVQASFNNTIVTITDVRGQVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2161 142 Hamap 30S ribosomal protein S11 [rpsK]. 15 142 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lele06g2161 142 Gene3D Ribosomal protein S11 16 142 IPR036967 GO:0003735|GO:0005840|GO:0006412
Lele06g2161 142 TIGRFAM uS11_bact: ribosomal protein uS11 23 139 IPR019981 GO:0003735|GO:0005840|GO:0006412
Lele06g2161 142 FunFam 30S ribosomal protein S11, chloroplastic 15 142 - -
Lele06g2161 142 SUPERFAMILY Translational machinery components 27 142 - -
Lele06g2161 142 ProSitePatterns Ribosomal protein S11 signature. 110 132 IPR018102 -
Lele06g2161 142 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 11 142 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lele06g2161 142 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 27 140 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lele06g2161 142 Pfam Ribosomal protein S11 32 141 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2161 32 132 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 35.455 2.34e-13 61.6