Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2109 ATGTTTCTGACAAAAGTCTGTATAGTTCGTGATGTAAGGGATGGGATTGGGAGCTTATCAAGGCGGAGTTTTGAGGTGAGGCTTCCAGGCCATCGTAGGAAGGCACAGAGCTCAGTACACGAATTACAAGATCAAGCTCGAGTTATACAGAACAGCTGTTGGGCTAGCCTTCCACCAGAGCTTCTTCGTGATGTCATCAAAAGATTGGAAACAAGCGAGAGTACATGGCCTGGTCGTAAACATGTAGTTGCCTGTGCTTCTGTATGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCAGAGTTCTCTGGGAAGATTACTTTCCCTATTTCCCTAAAACAGCCTGGATTCAGGGATGGAACCATCCAGTGTTTCATCAAGAGGGACAAATCTAATTTGGCATACCAACTTTTCCTTTGCCTTAGTCCTGCACTGCTTGTTGAAAATGGAAAGTTTCTTTTATCGGCAAAAAGGACAAGAAGAACTACATGCACAGAGTATATTATATCAATGGATGCAGATAACATATCAAGATCTAGTAGTAGGTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAATTTATAATTTTTGATACACAGCCTCCGTACAATAACTCTCAGCTGTCTCAACCTGGCCGAAGCCGTAGGTTTTATTCAAAAAAGGTTTCTCCAAAAGTCCCTAGTGGCAGCTACAATATTGCCCAAGTCTCTTATGAGCTTAATGTGCTTGGTACTAGGGGACCTCGACGGATGCACTGTACTATTTACTCAATCCCTGCATCATATCTGAAGCCTGGTGGCATTGTTCCGGGCCAACCTGAGCTTCTTCCCCATTCCCTTGAGGATTCATTCAGAAGTATATCCTTCTCAAAATCGATTGACAATTCAACTGAGTTTAGCAGCTCGACGTTCTCAGACATAATTGGTGTTGGAAACGAAGAGGATGAAGGCAAGGAGAGACCATTAGTTCTTAAGAACAAGGCACCAAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCCGGGGTAGGGTGACAGTTGCGTCCGTAAAAAATTTTCAGCTGATCGCAACCACGCCACCCAGTGCCCCGACACCAGCACAGCCATCGCAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTCACAATGGATTATAGATATCCCCTATCTGCGTTTCAGGCTTTTGCCATTTGCCTGACCAGCTTCGACACAAAACTGGCATGTGAATAG 1272 0.4434 MFLTKVCIVRDVRDGIGSLSRRSFEVRLPGHRRKAQSSVHELQDQARVIQNSCWASLPPELLRDVIKRLETSESTWPGRKHVVACASVCKSWREMCKEIVSSPEFSGKITFPISLKQPGFRDGTIQCFIKRDKSNLAYQLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSRYIGKLRSNFLGTKFIIFDTQPPYNNSQLSQPGRSRRFYSKKVSPKVPSGSYNIAQVSYELNVLGTRGPRRMHCTIYSIPASYLKPGGIVPGQPELLPHSLEDSFRSISFSKSIDNSTEFSSSTFSDIIGVGNEEDEGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIATTPPSAPTPAQPSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2109 423 FunFam Tubby-like F-box protein 49 102 - -
Lele06g2109 423 Pfam Tub family 115 418 IPR000007 -
Lele06g2109 423 ProSitePatterns Tub family signature 2. 408 423 IPR018066 -
Lele06g2109 423 SUPERFAMILY F-box domain 47 98 IPR036047 GO:0005515
Lele06g2109 423 Gene3D Tubby Protein; Chain A 112 423 IPR025659 -
Lele06g2109 423 FunFam Tubby-like F-box protein 111 423 - -
Lele06g2109 423 Gene3D - 48 102 - -
Lele06g2109 423 PANTHER TUBBY-RELATED 36 421 - -
Lele06g2109 423 SUPERFAMILY Tubby C-terminal domain-like 103 423 IPR025659 -
Lele06g2109 423 Pfam F-box domain 54 101 IPR001810 GO:0005515
Lele06g2109 423 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Lele06g2109 423 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lele06g2109 423 PRINTS Tubby superfamily signature 380 399 IPR000007 -
Lele06g2109 423 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Lele06g2109 423 PRINTS Tubby superfamily signature 401 423 IPR000007 -
Lele06g2109 423 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lele06g2109 423 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Lele06g2109 423 PRINTS Tubby superfamily signature 347 363 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2109 Lele-ChrLele06 23101727 23104656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2109 8 423 TUB Transcription Factor Family AT1G76900 68.062 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele06g2109 Tub 1.1e-114 CL0395