Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g2069 ATGGTTGCAGAGCATCCTAGAAGCATCTGTGAGCTTGTTTTTACAGTGGAGTCATTATTATTCATTTTGGAAAAAGACAGTCAATTGCCTATGTTAAGTATTGTCAAATATCGTGGCATCTTTGTTGCTGGACAAGCCAATTTTCCACCATCAGTAATCCCTTATGCTGCATTGAGAAATTGTCATTTTAAGACAGAAGGGGGTCAAAATGCTTTGGGTAAAAATTTTAAATTGTCACCAACCAGCATGCAAAGCAGAGTTGGAATTTTTTGGGATTTAGACAACAAACCACCCAAGTCATTGCCACCTCATGAAGCTGCTACTAAGCTGAAAGCAGCTGCATCTCACTTTGGTGTTGTTAAGCATATGGTAGCTTATGCAAATCGTCATACTTTTAGCCATGTCCCTCAAAATGTTAGGGAACAAAGAAAAGAAAGGAAATTGCTAAATCATTTAGAGAACAAGGGTATGATTAAGGCGGCTGAACCTTATCTTTGCCGGGTCTGTGGGAGAAAATTTTATACAAATGAGAAGCTTATTAAGCATTTTAAGGAAATACATGAGCGTGAGCACATAAAAAGATTGAACACAATAGAGTCAGCAAAGGGGAACAGGAGGGTGAAGCTGGTTGCTAAGTTTTCAATGAAAATGGAGAAGTATAAGAAAGCCGCAAGGAGCATATTGACTCCCAAAGTGGGGTATGGTTTGGCAGATGAGATAAAACATTCAGGGTTTTGGGTTCGGACTGTGTTGGATAAGCCACAAGCCGCAGATATTGCATTGAAAGGTCACATGGTAGATATGATGGATAATAAGCAGGTTGAGTGTGTGGTTCTTGTTTCAGATGATTCTGATTTTGCTGATGTATTAAAGGAGGCAAAGTTACGATGTCTCAAGACAGTTGTCGTTGGGGATACTAATGACGGGATCTTGAAGAGGACTGCTGATGCTGCCTTTTCATGGGAGGAAATTCTGATGGGGAAGGCAAAGAAGGAGGCAGTATCAGTTGTTGAAAAGTGGAAGGATCGTGATATTTTGAAAAGATTAGAGTGGACATACAATCCAGAGGTGGAGAAAAAGAAATACGGTCCACATGATATGGTTAGTGAGGATGAAGATATTAGTGATGCCTGTGATGAAGTTGATGGTGCCTATGGCAATAAGGAAGACTCAAATGCTTGGTGGGAATTGGATACTGATGATAATTTTATAAATAAACAATCAGAAACATCATGA 1236 0.3956 MVAEHPRSICELVFTVESLLFILEKDSQLPMLSIVKYRGIFVAGQANFPPSVIPYAALRNCHFKTEGGQNALGKNFKLSPTSMQSRVGIFWDLDNKPPKSLPPHEAATKLKAAASHFGVVKHMVAYANRHTFSHVPQNVREQRKERKLLNHLENKGMIKAAEPYLCRVCGRKFYTNEKLIKHFKEIHEREHIKRLNTIESAKGNRRVKLVAKFSMKMEKYKKAARSILTPKVGYGLADEIKHSGFWVRTVLDKPQAADIALKGHMVDMMDNKQVECVVLVSDDSDFADVLKEAKLRCLKTVVVGDTNDGILKRTADAAFSWEEILMGKAKKEAVSVVEKWKDRDILKRLEWTYNPEVEKKKYGPHDMVSEDEDISDACDEVDGAYGNKEDSNAWWELDTDDNFINKQSETS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g2069 411 CDD PIN_LabA-like 174 305 - -
Lele06g2069 411 ProSitePatterns Zinc finger C2H2 type domain signature. 166 187 IPR013087 -
Lele06g2069 411 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 81 405 - -
Lele06g2069 411 Gene3D - 80 325 - -
Lele06g2069 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 192 IPR013087 -
Lele06g2069 411 Gene3D Classic Zinc Finger 164 190 - -
Lele06g2069 411 Pfam NYN domain 238 316 IPR021139 GO:0004540
Lele06g2069 411 SUPERFAMILY beta-beta-alpha zinc fingers 161 190 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g2069 Lele-ChrLele06 16940724 16942508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g2069 74 402 C2H2 Transcription Factor Family AT4G12240 60.831 5.28e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele06g2069 NYN 1.6e-07 CL0280