LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g1999	ATGCTTTTCTGTATCGGCGTAACCTCCTACGCTCCTGTTGATAACTTCTTAGTCAACTGCGGTGCCTTCGGCAATTCTCCTCCTTTAGGTGGCGGCCGGAACTGGACTGGAGACAGAGACTCCACACGATTCTCTCCTATCGAATTCTCCAACAGCAACAACTCCTCAGCAAGCGCCGCCGCACTTGGCGAACCAATCCCTTACGACACCGCACGCCTGTCTCGTTCAGAATTCTCCTACTTGTTTCCTTTAAAGACCAACGGCCAAAAGTTTATTCGCCTTTATTTTTACCCATCTTCCTACGATGACCTCAACTTCCTCCGCTCCGACTCTTTCTTCTCCGTCAGAGTAGGGTCTCACACTCTTTTGAAAGACTTCAATGCTTCAATAATCGCCGATGACGACGCCGCCGAAGAAACCATTTTAAGAGAGTACTGCGTCTACATTTGTGACCCTAGTGAAGGGCTTAGCATAACCTTCACGCCCAACCCATCTCATCCAAACGCCTATGCTTTCGTCAATGGCATCGAAGTCGTCTCTATGCCGACGTTTCTTTACTACACCAAACCTGATGACCTTCATTCTATGTTGTTAAATGACGGAACCCAACAGTATCCGGTCAAAAACAATAGAGCTCTTGAGACGGTGTACAGAACCAATGTTGGTGGGAGCCAGATTCCTAGCGAACGTGATACCGGCATGTTTCGTTATTGGGACCAGGATATTGCGTGCTTGGAGAGCAGGGAGCGACCACATAGTGTATCAGCAGGTTTTGGTTTAAAGCCAATCTACAGAGATGATCAAAATTATTTTGCACCTGATGATCCTGTTGCCGATGTGATGCTGTGGACTCAGAGACTGGTTCCAGTTCATAGGGACTATGCCGTGTCGATGCCTAGACATGGAAGCTTGAAGAAGCTGAATCTTTCAATTAAGTTGCAACCACACCCAACCGTAAGAAGCATTTACAGAGATGTTTTATTGAATGCTTCTGGCTTCATTCTGCTATCTCTCATCATTTTGCTTACTTATTGTCTATTGGCTAGAGCTGCAATCAACGAAGGAAATTCACAGTGGGGACGAAAACCAGAATCGACGTCAAAAGCAAACAACTCGTCACTGTTACCATCTGATTTGTGTCGGTGCTTTTCAATAAGGGAGATCAAAGCAGCCACTAATGATTTTGATGCTAGTTTAGTTATTGGTGTTGGAGGGTTTGGCAATGTCTATAAAGGCCAAATTGAGAACGGTTCAATTCCTGTGGCAATCAAACGGCTCAAACAAGGTTCACAACAAGGCCTCAAAGAGTTTGAAACTGAGATTGGAATGCTCTCTCAACTTCGTGACCATCATTTGGTATCTCTCATTAGTTTCTGCAACGATGACGACGAGATGATCCTCGTCTACGAGTTCATGGCTCGTGGAACCTTTCGTGAGCATCTTTATGATTCTGAGAACCAACCACTTTCATGGAATCAAAGGCTGGAGATTTGCCTAGGTGCTGCACGGGGACTGCATTACCTACATACAGGGGCAAAGCATGCAATCATTCATCGAGACGTCAAGTCAACAAACATCTTGATAGATCAAAACTGGACGGCTAAGATTTCGGATTTCGGACTATCCAAAGTAGGACCAGCTGGTATTTCGAGATCTAACATTAACATAAGCACATTAGTGAAAGGAAGCATTGGATATTTGGATCCAGAATACTACACAGTTCAAATATTGACGGATAAGTCAGACGTGTACTCATTCGGAGTTGTGTTGCTTGAGGTATTATGTGGGAGGGCTCCTATTCTCCGCGCGGTGGAGAGGGAGAGGCAAGACCTTGTAGAGTGGTTTCGAAGAAGTTTTGATGAGAATGAGATTTATGAGACGGTTGATCCAACCTTGAGGGAAAGCATGACGCCAGAATGCTTAATGGCATACACTGAGATTGCATTGAAATGCTTAGCAAATAAGGGGAATGATCGGCCATCCATAGGTGATGTAATGTTGGGCTTCGAGTCTCTGATGGAGACGATGAACAAGGTAGAGAGACAAAGCTTGGTGTGA	2058	0.4519	MLFCIGVTSYAPVDNFLVNCGAFGNSPPLGGGRNWTGDRDSTRFSPIEFSNSNNSSASAAALGEPIPYDTARLSRSEFSYLFPLKTNGQKFIRLYFYPSSYDDLNFLRSDSFFSVRVGSHTLLKDFNASIIADDDAAEETILREYCVYICDPSEGLSITFTPNPSHPNAYAFVNGIEVVSMPTFLYYTKPDDLHSMLLNDGTQQYPVKNNRALETVYRTNVGGSQIPSERDTGMFRYWDQDIACLESRERPHSVSAGFGLKPIYRDDQNYFAPDDPVADVMLWTQRLVPVHRDYAVSMPRHGSLKKLNLSIKLQPHPTVRSIYRDVLLNASGFILLSLIILLTYCLLARAAINEGNSQWGRKPESTSKANNSSLLPSDLCRCFSIREIKAATNDFDASLVIGVGGFGNVYKGQIENGSIPVAIKRLKQGSQQGLKEFETEIGMLSQLRDHHLVSLISFCNDDDEMILVYEFMARGTFREHLYDSENQPLSWNQRLEICLGAARGLHYLHTGAKHAIIHRDVKSTNILIDQNWTAKISDFGLSKVGPAGISRSNINISTLVKGSIGYLDPEYYTVQILTDKSDVYSFGVVLLEVLCGRAPILRAVERERQDLVEWFRRSFDENEIYETVDPTLRESMTPECLMAYTEIALKCLANKGNDRPSIGDVMLGFESLMETMNKVERQSLV	685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g1999	685	SMART	serkin_6	395	673	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele06g1999	685	ProSiteProfiles	Protein kinase domain profile.	395	673	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele06g1999	685	Gene3D	Transferase(Phosphotransferase) domain 1	472	684	-	-
	Lele06g1999	685	FunFam	Receptor-like protein kinase FERONIA	472	684	-	-
	Lele06g1999	685	Gene3D	Phosphorylase Kinase; domain 1	356	471	-	-
	Lele06g1999	685	FunFam	FERONIA receptor-like kinase	15	182	-	-
	Lele06g1999	685	CDD	STKc_IRAK	401	665	-	-
	Lele06g1999	685	Pfam	Protein tyrosine and serine/threonine kinase	400	665	IPR001245	GO:0004672\|GO:0006468
	Lele06g1999	685	SUPERFAMILY	Protein kinase-like (PK-like)	380	667	IPR011009	-
	Lele06g1999	685	FunFam	receptor-like protein kinase FERONIA	357	471	-	-
	Lele06g1999	685	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	516	528	IPR008271	GO:0004672\|GO:0006468
	Lele06g1999	685	ProSitePatterns	Protein kinases ATP-binding region signature.	401	424	IPR017441	GO:0005524
	Lele06g1999	685	Pfam	Malectin-like domain	18	240	IPR024788	-
	Lele06g1999	685	PANTHER	OS07G0166700 PROTEIN	380	674	IPR045272	GO:0004714\|GO:0006468
	Lele06g1999	685	Gene3D	-	15	182	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g1999	Lele-ChrLele06	15141310	15143696	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g1999	355	681	Receptor kinase-like Gene Family	AT3G51550	54.128	9.66e-119	374

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Lele06g1999		PK_Tyr_Ser-Thr	1.1e-47	CL0016