Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1925 ATGGAGGAGTGCATTCTTCAGAATCCTTCAGACGTGAATGTTGAAGCTAGAGATCAAATTGAATGCCACCTCAGAGTACTTCAAAATGAAGTAGAAGATGAAGAAGATGGATCATGTGAAGAACTAGAAGAAGATCCTGTTGAAGAAGTTGAGCAAAAGCAGCTGGAAGAAAAAACTCTTAATGGGAACGATCACAAATCAGGATTTGTCAAATCAAATGATAAGAAGAGGTATCTGAATGTTGCATCTGGTGAATTAACTACGTTGCTATGCTATCAGTCACAAAAGAAGTGCAAGCAAGTTGGATCTTCTGGTCTGAAATTAGAATCTGGACCTTCAGATTCGGAGCTCAATAATGATTCTGTCACTGCAGTGGCATCTATTGATAATTCTACTTCCAAAGAAGGTACTGGAAGTTCTGGAAAACGAAGGCGCAGCAGATGGGAACCACAGTCTGAGGATGATGGTGTAAAAGATTATCAGACTTGCAAGAGGAGGAAAACCAGGTGGTCCGATGAGGACACTCAACTAAAAATTCTTGGGCCACTTCAGCTGCCTGATTTCACTAAAGATTTTCTTGTTGGATATGAGAATGATCCTGAAATTCAAGGGTTGAAAGATGAGCTTTTTGAGATTAATAGAAGATTGCATGGACCTCTTCATGATGATAGGCTTGAGGAGGAAATATCTCCTTCACCAGAACCAATATATGATGACCTTGGCATCAGAATAAATACAAGAGAAGTAAGACTTCGTCAGAAACTTGTCCAGAAACGTCAAAATATCATATCAAAATTGATCAAATCAAACCGAGGTTTTAGCCCTCCCGATTACAAGCCTCCAAAACTCTTCAAAAAACTTTACATCCCAATGAGAGAATATCCAGAGTACAATTTTGTTGGCCTTATAATTGGGCCTCGTGGAAACACACTGAAGAGAATGGAAAATGAATCTGGGGCCAAGATTCATATAAGAGGAAAAGGATGCTCCAAAACGCCCAACAAATCTGCCTCTTCTAAAGAGGACTTACATGTTTATATAGAAGCAGACAACAAAAATTCTCTGGATGCGGCAGTTGCCATGGTTGAAATATTGCTAATCCCAGTTGAAGGAAGAAATGAGCACAAGGAGGCTCAATTAAAGGAGCTGGCCATGCTGAATGGAACAGCTAGGGATGAAAATATGTGCTATGTTTGTGGTGATGAGGGACATCTGTCATATGCCTGCCCTGACCTTCAATCAACTTTCAAAGTGAACTCATTCTATACATGTTTTAGTGACAGTCCTTTGGATATGCTATCTCCACAGAATGAATCTGTTCAGGGTTCTGGGTTTGATTTTAGTTTCAGTTCAACACAGAGTAGACAATGGAGGCCTGAAAATAAATCATTGATGAATAATCTTTATGTTGGCAATCTGCCCCAAGCCTTTGATGATAATAGATTGTCTGAGCTGTTTTCTCCATTTGGTAAGATCCTTGAAGTAAAAGCTATAAAGGATCGAACAACTGGAATTTGTAGAGGTTATGGATTTGTCAAGTTCGACAATGCCACAGATGCACAAGTAGCTGTGACTCATATGAACGGTTTTAAAATGGATGGGAGGGTTTTGAAGGTAAGGATAGCTAAGCTTTTGTCAAATACTGAATCTTCAAGCTTGAACCATCTGCCACGGCTCTCTGGTCCTACAGGCCCATTACATTTTATGCTGCCAGAACATCCAACTTCGTTTCACAACAGCAGCGGCATGAATCTGTTTTCACCCCCCATGAACTCACTGCATTGTGATCTTAATAAGGATAGAAGCTTTTCTCCTCCAAGCTACTGCTCAAGAACTTCTGATTTTAGTAATTCTGGCAAAATGCATTTTTCATGCAACTCTTCAGATCAAAGTGTTTTGTTATCTGGTAGTTCGGTTTCAGAGAGTCCTCGCTCCCAATATCAGTCATATTTTATGACGCCGCCACTCCATAGAGCTGCACTGCCCTATCCTGATCATAGATTAGAAGATACGGGTTCTTTCCCTTCTTCATTGCAGAGAAGGTATTACAGGGCACTTAATTGA 2064 0.4021 MEECILQNPSDVNVEARDQIECHLRVLQNEVEDEEDGSCEELEEDPVEEVEQKQLEEKTLNGNDHKSGFVKSNDKKRYLNVASGELTTLLCYQSQKKCKQVGSSGLKLESGPSDSELNNDSVTAVASIDNSTSKEGTGSSGKRRRSRWEPQSEDDGVKDYQTCKRRKTRWSDEDTQLKILGPLQLPDFTKDFLVGYENDPEIQGLKDELFEINRRLHGPLHDDRLEEEISPSPEPIYDDLGIRINTREVRLRQKLVQKRQNIISKLIKSNRGFSPPDYKPPKLFKKLYIPMREYPEYNFVGLIIGPRGNTLKRMENESGAKIHIRGKGCSKTPNKSASSKEDLHVYIEADNKNSLDAAVAMVEILLIPVEGRNEHKEAQLKELAMLNGTARDENMCYVCGDEGHLSYACPDLQSTFKVNSFYTCFSDSPLDMLSPQNESVQGSGFDFSFSSTQSRQWRPENKSLMNNLYVGNLPQAFDDNRLSELFSPFGKILEVKAIKDRTTGICRGYGFVKFDNATDAQVAVTHMNGFKMDGRVLKVRIAKLLSNTESSSLNHLPRLSGPTGPLHFMLPEHPTSFHNSSGMNLFSPPMNSLHCDLNKDRSFSPPSYCSRTSDFSNSGKMHFSCNSSDQSVLLSGSSVSESPRSQYQSYFMTPPLHRAALPYPDHRLEDTGSFPSSLQRRYYRALN 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1925 687 MobiDBLite consensus disorder prediction 138 160 - -
Lele06g1925 687 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 468 538 IPR000504 GO:0003723
Lele06g1925 687 Gene3D - 435 552 IPR012677 -
Lele06g1925 687 CDD SF1_like-KH 285 391 - -
Lele06g1925 687 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 466 544 IPR000504 GO:0003723
Lele06g1925 687 Pfam KH domain 298 362 IPR004088 GO:0003723
Lele06g1925 687 MobiDBLite consensus disorder prediction 124 160 - -
Lele06g1925 687 ProSiteProfiles Zinc finger CCHC-type profile. 396 411 IPR001878 GO:0003676|GO:0008270
Lele06g1925 687 PANTHER RNA-BINDING PROTEIN RELATED 130 620 IPR045071 -
Lele06g1925 687 SMART rrm1_1 467 540 IPR000504 GO:0003723
Lele06g1925 687 SUPERFAMILY RNA-binding domain, RBD 450 546 IPR035979 GO:0003676
Lele06g1925 687 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 283 398 IPR036612 GO:0003723
Lele06g1925 687 Coils Coil 17 37 - -
Lele06g1925 687 Gene3D - 199 276 - -
Lele06g1925 687 SMART kh_6 283 367 IPR004087 GO:0003676
Lele06g1925 687 ProSiteProfiles Type-1 KH domain profile. 298 362 - -
Lele06g1925 687 Pfam Splicing factor 1 helix-hairpin domain 166 279 IPR032570 -
Lele06g1925 687 Gene3D K Homology domain, type 1 280 395 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1925 Lele-ChrLele06 13936257 13938320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1925 395 542 Eukaryotic Initiation Factors Gene Family AT3G11400 31.646 5.56e-12 65.9