Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1921 ATGGCTCCATCGCCGGCGGATCACAAAGGCGAGTCCATGGCCGGTGAGTCTCAGAGATCTATTCCGACGCCTTTTTTAACGAAAACTTATCAACTTGTTGATGATCATTCCATAGACGATGTCATATCCTGGAACGAAGATGGATCCAGTTTCATCGTTTGGAATCCTACGGTTTTCGCCAGAGATTTGTTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTCGTCCGCCAACTCAACACCTATGGATTCAGAAAAGTAGTACCGGATCGGTGGGAATTCACGAACGAGTGTTTTCGGAGAGGCAAGAAGCAACTTCTATGTGAAATTCAGCGTCGGAAAATCTCATCGCCTTCGCCACCACCAGCAGGTGCAACTGCGGTAGCTTCAGTTCCGGCGACGTCGCCGGCGACATTGACGGTAAAACCAACGGCGAAGCCTATCATATTGCCTTCAAACTCAGGGGAAGAACAAGTCATTTGGTCGAATTCATCGCCGACCAGAGCTCCGGCTGAACTCTTAAACGAGAACGAGAGGCTGAGAAAAGAAAACGTTCAGCTGAGCGAGCAATTAGCAGAGATGAGATCTCTGTGTAACAACATATTCAATCTAATCTCAAAGCACGCAAATGACCAAAATAGCAGTTTCCAAGGTAGAGCTAGTGACTTCACCGCCGTAAAACCGCTCGATTTGATGCCGGTTGCGCGTAAGTCAGGTAACATAGAAGCGGTGGCGATGGTGGAAGACGAAATGAATCCGAAGCTGTTTGGGGTGGCGATCGGTGCGAAACGATCACGAGAAGTTGAAGGCGGTGGCGGAGGCGGAGGCGATCCTCTGATAAGCTTGTACCGAGCGGGGCCCACAGATATGAAATCAGAGCCGTTGGGTTACCAAAGGCGTCGAGATAATCAGGAAGCGCCGTGGCTGAATCCACGCCATAACGAAAATCAGAGAGTTTGCAATTAA 969 0.4871 MAPSPADHKGESMAGESQRSIPTPFLTKTYQLVDDHSIDDVISWNEDGSSFIVWNPTVFARDLFPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFTNECFRRGKKQLLCEIQRRKISSPSPPPAGATAVASVPATSPATLTVKPTAKPIILPSNSGEEQVIWSNSSPTRAPAELLNENERLRKENVQLSEQLAEMRSLCNNIFNLISKHANDQNSSFQGRASDFTAVKPLDLMPVARKSGNIEAVAMVEDEMNPKLFGVAIGAKRSREVEGGGGGGGDPLISLYRAGPTDMKSEPLGYQRRRDNQEAPWLNPRHNENQRVCN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1921 322 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1921 322 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1921 322 MobiDBLite consensus disorder prediction 267 297 - -
Lele06g1921 322 MobiDBLite consensus disorder prediction 303 322 - -
Lele06g1921 322 Coils Coil 178 198 - -
Lele06g1921 322 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1921 322 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1921 322 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1921 322 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Lele06g1921 322 FunFam Heat stress transcription factor B-4 17 115 - -
Lele06g1921 322 Gene3D - 17 115 IPR036388 -
Lele06g1921 322 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 233 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1921 Lele-ChrLele06 13907744 13908804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1921 3 322 HSF AT5G62020 45.697 7.89e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele06g1921 HSF_DNA-bind 3.3e-32 CL0123