Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1904 ATGGATGTTGATGGGAGTAATAAGCGCGTCTTCCAGCGTCTCCGTGGGCCTCCAGCCGATAACAAGCACCAGAAAGTGTGTTTTCATTGGCAGGCAGGAAGGTGCAATAGATATCCGTGCCCATTTCTACACAGTGAATTGCCTCCTTCAAACGCCAATGGAATGTCTTCAAAAAGGTCCCATGGGTCTGCCGATGATTCAGGGTTCTCGGGTACACGAAGGAATCCGAATTTTAGTGGATCGTCAACGTGGGGCGGGGTTCATGGTGGCAATAAATTAATTAGGAAGACTGAAAAGCTTTGTACTTATTGGATTCAGGGGAATTGTAGCTATGGAGAAAGATGTAAGTACCTTCACTCTTGGAGTGTAGGGGATGGCTTTTCCTTACTAACGCAACTTGAAGCCCATCAGAAGGTTGTGACCGGAATATCTCTGCCATCTGGTTCAGATAAGCTTTATACTGGAAGTAAAGATGAGACAGTAAGGCTTTGGGATTGCCAGTCTGGTCAGTGTTTGGCTGTGATTAATCTTGGTTGTGAAGTGGGTTGTATGATCAGTGAAGGTCCTTGGCTTTTTGTTGGTGTACCTAATTTTGTTAAGGCCTGGAACACTCAAGTATCGAGTGAACTGAGTCTGAGTGGCCCTGCTGGACAAGTTTACACTTTGGCTGTGGGCAACAGTATGCTTTTTGCGGGGACACAGGAGGGGTCTATATTGGCATGGAAGTTTAATGCGGCTACTAACAACTTTGAGCCTGTTACATCACTAACGGGCCATTCTGGTCCTGTTGTTTCATTTGTTGTCGGAGCAAATAGGCTATACTCAGGTTCAATGGACAAGACCATAAGAGTCTGGAACCTTGAGACATTGCAGTGTTTACAGACTTTAACAGGGCATGCATCAGTTGTGATGTCTGTTCTTTGCTGGGACCAGTTTCTTTTATCTGGTTCATTAGACAAGACAGTAAAGGTGTGGGTAGCTACAGAAAGTGGAAACTTGGAAGTAACTTATACTCACAATGAGGAAGATGGTGTGCTTAAACTGTGTGGGATGCACGATGCTCAAGGCAAGCCAATTTTGCTGTGCTCTTGCAACAATAATACTGTTCACCTCTATGACCTGCCATCCTTTGCAGAGAGAGGCAAGATTTTTACAAAGCAAGAGGTTCGAGCTATCGAGGTTGGTCCTGGTGGCTTATTCTTCACCGGTGATGGAACAGGTCAAGTGAAAGTCTGGAATTGGTTGCCTGAGCCAGCTTCTTCGCATCCAATAAATGGCTCTTCTTAA 1287 0.453 MDVDGSNKRVFQRLRGPPADNKHQKVCFHWQAGRCNRYPCPFLHSELPPSNANGMSSKRSHGSADDSGFSGTRRNPNFSGSSTWGGVHGGNKLIRKTEKLCTYWIQGNCSYGERCKYLHSWSVGDGFSLLTQLEAHQKVVTGISLPSGSDKLYTGSKDETVRLWDCQSGQCLAVINLGCEVGCMISEGPWLFVGVPNFVKAWNTQVSSELSLSGPAGQVYTLAVGNSMLFAGTQEGSILAWKFNAATNNFEPVTSLTGHSGPVVSFVVGANRLYSGSMDKTIRVWNLETLQCLQTLTGHASVVMSVLCWDQFLLSGSLDKTVKVWVATESGNLEVTYTHNEEDGVLKLCGMHDAQGKPILLCSCNNNTVHLYDLPSFAERGKIFTKQEVRAIEVGPGGLFFTGDGTGQVKVWNWLPEPASSHPINGSS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1904 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 174 IPR001680 GO:0005515
Lele06g1904 428 Gene3D - 209 426 IPR015943 GO:0005515
Lele06g1904 428 Pfam CCCH-type zinc finger 99 119 IPR041367 -
Lele06g1904 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 289 - -
Lele06g1904 428 SMART WD40_4 126 165 IPR001680 GO:0005515
Lele06g1904 428 SMART WD40_4 330 373 IPR001680 GO:0005515
Lele06g1904 428 SMART WD40_4 205 242 IPR001680 GO:0005515
Lele06g1904 428 SMART WD40_4 289 326 IPR001680 GO:0005515
Lele06g1904 428 SMART WD40_4 249 286 IPR001680 GO:0005515
Lele06g1904 428 SMART WD40_4 376 413 IPR001680 GO:0005515
Lele06g1904 428 FunFam Zinc finger CCCH domain-containing protein 48 121 211 - -
Lele06g1904 428 SUPERFAMILY WD40 repeat-like 112 414 IPR036322 GO:0005515
Lele06g1904 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 325 IPR001680 GO:0005515
Lele06g1904 428 Gene3D - 91 120 - -
Lele06g1904 428 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Lele06g1904 428 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Lele06g1904 428 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Lele06g1904 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 165 - -
Lele06g1904 428 PANTHER - 7 420 IPR044715 -
Lele06g1904 428 Gene3D - 6 60 - -
Lele06g1904 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 295 IPR001680 GO:0005515
Lele06g1904 428 MobiDBLite consensus disorder prediction 51 83 - -
Lele06g1904 428 FunFam Zinc finger CCCH domain-containing protein 48 213 421 - -
Lele06g1904 428 Pfam WD domain, G-beta repeat 251 286 IPR001680 GO:0005515
Lele06g1904 428 Pfam WD domain, G-beta repeat 129 165 IPR001680 GO:0005515
Lele06g1904 428 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515
Lele06g1904 428 MobiDBLite consensus disorder prediction 1 21 - -
Lele06g1904 428 Gene3D - 121 194 IPR015943 GO:0005515
Lele06g1904 428 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Lele06g1904 428 ProSitePatterns Trp-Asp (WD) repeats signature. 273 287 IPR019775 -
Lele06g1904 428 ProSiteProfiles Zinc finger C3H1-type profile. 95 122 IPR000571 GO:0046872
Lele06g1904 428 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Lele06g1904 428 SMART c3hfinal6 97 121 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1904 Lele-ChrLele06 13651018 13658301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1904 228 413 Miscellaneous Gene Families AT5G08390 27.551 5.48e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele06g1904 WD40 0.00045 CL0186