Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1868 ATGGCAGAAGACGATGAAGGAGTGACATTTAAGGATCTGGGCTTAGCTCAGGAGCTGGTGGAAGCTTGTGAAAAGTTGGGTTGGACAAAACCATTGAAGATTCAGGCTGAAGCAATTCCTCTTGCACTGGAAGGAAAAGATGTTATTGGGCTTGCCCAAACTGGCTCTGGGAAGACTGGTGCTTTTGCTCTTCCCATACTGCATGCTCTTCTAGAAGCACCACGACCAAAAGACTTTTTTGCTTGTGTGTTGTCTCCCACAAGAGAGCTTGCTATTCAAATATCCGAACAGTTTGAAGCATTAGGTGCTGAAATTGGTGTCAAGTGTGCTGTGCTAGTGGGAGGGATTGAGATGGTGCAGCAGGCAATCAAGATAGCAAAGCAGCCTCATATTATTGTTGGGACTCCTGGTCGAGTTTTAGATCACCTAAAAAACACTAAAGGTTTTAGTCTTGACAGATTAAAATATTTGGTACTAGATGAGGCTGACAGGCTGTTGAATGAAGATTTTGAGGCATCTCTCAATGAGATTCTGGAATTCTTCCCTCAACAGAGAAGAACATTCCTGTTTTCTGCTACGATGACTAAGAAGGTCCAAAAACTCCAAAGGGTTTGCTTAAGAAATCCTGTGAAGATCGAAGCAGCATCTAAATATTCTACTGTTGACACTTTGAAGCAACAGTATCGCTTTTTGCCTGCTAAGCACAAGGATTGCTTCCTGGTCTATATTTTGACTGAAATGGCTGGAAGTACGTCGATGGTGTTTACCCGCACATGTGATTCAACCCAGCTCCTGGCTTTAACTCTTAGAAATTTGGGCCTCAAAGCCATCCCAATTAATGGGCATATGAATCAGTCAAAGAGACTTGGAGCCTTGAATAAGTTCAAGTCTGGAGATTGCAATATCCTTATATGTACTGATGTGGCAAGTAGAGGTCTGGACATTCCTACAGTAGATATGGTTATCAACTATGATATACCTACAAACTCCAAGGATTATATACATCGTGTGGGAAGAACTGCTCGGGCAGGGCGATCTGGTGTTGCCATTTCCCTTGTGAATCAATATGAACTGGAGTGGTACATTCAGATAGAGAAGCTTATAGGCAAGAAATTACCAGAGTATCCTGCGCAGGAAGAGGAGGTTCTGCTTTTGGAAGAGCGTGTCAGTGAGGCCAAAAGATTATCAGCAATGAAAATGAAGGAGAATGGAGGGAAGAGGAGAAGGAAGGGTGAAGGAGATGATGAAGAGGAAGATATTGAAAAATACTTAGGTCTCAAGGATGGAAAATCATCCAAAAAGTTCAAAAGGAAATGA 1317 0.4252 MAEDDEGVTFKDLGLAQELVEACEKLGWTKPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPRPKDFFACVLSPTRELAIQISEQFEALGAEIGVKCAVLVGGIEMVQQAIKIAKQPHIIVGTPGRVLDHLKNTKGFSLDRLKYLVLDEADRLLNEDFEASLNEILEFFPQQRRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCFLVYILTEMAGSTSMVFTRTCDSTQLLALTLRNLGLKAIPINGHMNQSKRLGALNKFKSGDCNILICTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLSAMKMKENGGKRRRKGEGDDEEEDIEKYLGLKDGKSSKKFKRK 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1868 438 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 8 418 - -
Lele06g1868 438 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 8 36 IPR014014 GO:0003724
Lele06g1868 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 365 IPR027417 -
Lele06g1868 438 MobiDBLite consensus disorder prediction 396 421 - -
Lele06g1868 438 CDD SF2_C_DEAD 224 353 - -
Lele06g1868 438 Gene3D - 2 217 IPR027417 -
Lele06g1868 438 Gene3D - 218 390 IPR027417 -
Lele06g1868 438 SMART ultradead3 27 227 IPR014001 -
Lele06g1868 438 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 212 IPR014001 -
Lele06g1868 438 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 158 166 IPR000629 -
Lele06g1868 438 CDD DEADc_DDX47 9 213 IPR044765 GO:0005524
Lele06g1868 438 Pfam DEAD/DEAH box helicase 33 201 IPR011545 GO:0003676|GO:0005524
Lele06g1868 438 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 223 383 IPR001650 -
Lele06g1868 438 Pfam Helicase conserved C-terminal domain 239 344 IPR001650 -
Lele06g1868 438 SMART helicmild6 263 344 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1868 Lele-ChrLele06 13172672 13180539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1868 9 376 Eukaryotic Initiation Factors Gene Family AT3G19760 31.720 1.48e-64 211