Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1860 ATGGAAGAAAAAGATAGTTTTTTCTCAGGGCTCACCGTGAGGGCTAACGATGCTCCTGAAAGCCACCATGTAACTCCGAGAAGTGAAAACTATGGACTGTTTGGCGGGCCCACAGGAGCATCGCCCGCCATGGCCCCAACCCCGTCACCTGCACCAGCTCCAACTACGGCTCCAACTTCATCTTCATCTCCAGCTTCAGCTAGAGCTCCAGTGCCAGCTTCAGTTTCTGCGCCGGAGCCGGTCAGTGTGGCGGCGGCGGCAACGACAGGGAGCACGGATGTAGTAAAGAAGAAGAGGGGAAGGCCTAGGAAGTACGGGCCAGATGGTAAATTAGCGTTGGCGTTGTCGCCGATGCCGATTTCATCGTCAATTCCGTTGACTGGAGACTACTCAATGTGGAAACGGGGTAGAGGGCGGCCAGTTGAATCGGTCAAGAAGTTTAAGTGCGATTTTGAAAGTCATGGACCAGGTGATGGGATTGCATACTCAGTTGGTGCCAATTTCACACCCCATGTGCTTACTGTTAATGCTGGCGAGGATGTTAATATGAAGGTCATGTCCTTCTCTCAACAGGGATCTCGTGCTATTTGTATTCTTTCTGCAAATGGAACAATTTCAAATGTTACACTGCGTCAACCAACTTCTTCGGGGGGTACCTTAACATACGACGGACGATTTGAGATTCTTTCTTTGTCTGGTTCATATATGCCTTCTGAGAATGGTGTGACAAGAAGTAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTTGTGGGAGGTGGCCTTGCTGGTCTGTTGGTAGCAGCAGGACCTGTGCAGGTTGTTGTGGGTAGTTTTCTTCCAGGCCACCAGCAGATGCAGAAACCTAAGAAGCAAAAGACGAATCATTTTTCACCAGTTACATCTGGACACTATAATCCCGTCCCAGTTGATGAAATAAAAATCAGTTTCGGAGGTGTAAAGCCTATTATGACTCCTGCTGCATTTCAAGCAGACAACAACACTGCTTTTAACAATGTCCCAGGCTCTAGCAACTCATCTGCAGATGATGATGCCGACGAGGATGATGGTGTTGATGCGACACTTTATCCTGAAAAGGACTCTAACCCTAGCCAAACAAATGCCAGAGTCGCATGCTAA 1152 0.4887 MEEKDSFFSGLTVRANDAPESHHVTPRSENYGLFGGPTGASPAMAPTPSPAPAPTTAPTSSSSPASARAPVPASVSAPEPVSVAAAATTGSTDVVKKKRGRPRKYGPDGKLALALSPMPISSSIPLTGDYSMWKRGRGRPVESVKKFKCDFESHGPGDGIAYSVGANFTPHVLTVNAGEDVNMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYDGRFEILSLSGSYMPSENGVTRSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQMQKPKKQKTNHFSPVTSGHYNPVPVDEIKISFGGVKPIMTPAAFQADNNTAFNNVPGSSNSSADDDADEDDGVDATLYPEKDSNPSQTNARVAC 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1860 383 SMART AT_hook_2 96 108 IPR017956 GO:0003677
Lele06g1860 383 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Lele06g1860 383 CDD DUF296 169 283 IPR005175 -
Lele06g1860 383 ProSiteProfiles PPC domain profile profile. 165 304 IPR005175 -
Lele06g1860 383 FunFam AT-hook motif nuclear-localized protein 1-like 170 301 - -
Lele06g1860 383 MobiDBLite consensus disorder prediction 339 383 - -
Lele06g1860 383 Gene3D - 170 301 - -
Lele06g1860 383 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 283 IPR005175 -
Lele06g1860 383 MobiDBLite consensus disorder prediction 288 307 - -
Lele06g1860 383 MobiDBLite consensus disorder prediction 289 306 - -
Lele06g1860 383 MobiDBLite consensus disorder prediction 1 75 - -
Lele06g1860 383 MobiDBLite consensus disorder prediction 43 57 - -
Lele06g1860 383 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 58 351 IPR039605 GO:0003680
Lele06g1860 383 MobiDBLite consensus disorder prediction 88 110 - -
Lele06g1860 383 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 289 - -
Lele06g1860 383 MobiDBLite consensus disorder prediction 369 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1860 Lele-ChrLele06 13076016 13079624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1860 76 331 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 56.391 1.69e-90 276