Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1838 ATGGTTTCCTTCCTTTGTATTCTAGATTTTTCTAATGTTTGTTTGCTCTTCATTGATATTCCATATTGCATTCTTATTTGTTGCAGACTAGAGACAGGGAACAATTCTCTCCAAGGAAATGCAAGCGATATTTCTTCAGGCCTAAAGTATCCTTCTGAAGTGACTCTTCTACATGACTTGAGATACTTGTATACTTCTCTTCTTCATCCTCAGATGATGTTGAACTATGATCCAGAGGAGACAAGGGCAATGGCCGTGAGCTCTGCTCAGAAACTTATTGACTGCAAGCAGTTTGTAAAGGACTTTAGACCTGAGATGATGCCGTTGACAAACCCGTCTAAGATACGCTTCTCATGTCAAATAGAACTAGAAGATGAATCTGAAGATGTCACCGCTCACCTTCCACCAGAATTAGTTATCCTCCCTGTAAATGCCACCGTATCTGACCTCAAGATTGAAGCGGCAAATTCCTTTCAAGATGTATATGTCATGTTCAGAAGACTTCAAACTGAGGAGCTACTTGGCTACAATGTTGATGATTCCTCCCCGGTCAAGCACTTATCAGGATCTAGGATGGATGCAGTCCGGCTGCGAGGAAGATGCCCTGGCAAGAATGGATTGAGCCAATTCCAAATGGAACGGGGCGTTGAGAGGTGGGCCATGGATTGCAGCTGTGGGGCGAAGGACGATGATGGAGAGAGAATGTTGGCTTGTGATATATGTGGAGTGTGGAGACACACAAGGTGTTGTGATATTCATGATGCAGATCCTGTTCCTGCACGGTTTGTTTGTCCAAGATGCCAAAACTGTGACTCCAAACCCAAATCTAATGGGGATGAGATTGCGAATGATATTATGACCACTAAGAACAGCTTTGAAAACTGCATGCTGGTGCCATCTGATGCTCGTTGA 912 0.4375 MVSFLCILDFSNVCLLFIDIPYCILICCRLETGNNSLQGNASDISSGLKYPSEVTLLHDLRYLYTSLLHPQMMLNYDPEETRAMAVSSAQKLIDCKQFVKDFRPEMMPLTNPSKIRFSCQIELEDESEDVTAHLPPELVILPVNATVSDLKIEAANSFQDVYVMFRRLQTEELLGYNVDDSSPVKHLSGSRMDAVRLRGRCPGKNGLSQFQMERGVERWAMDCSCGAKDDDGERMLACDICGVWRHTRCCDIHDADPVPARFVCPRCQNCDSKPKSNGDEIANDIMTTKNSFENCMLVPSDAR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1838 303 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 49 278 - -
Lele06g1838 303 CDD PHD_MMD1_like 222 267 - -
Lele06g1838 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 273 IPR013083 -
Lele06g1838 303 Pfam PHD-finger 223 270 IPR019787 -
Lele06g1838 303 SMART PHD_3 222 268 IPR001965 -
Lele06g1838 303 SUPERFAMILY FYVE/PHD zinc finger 212 269 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1838 Lele-ChrLele06 12917772 12918683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1838 85 267 PHD Transcription Factor Family AT5G22260 26.154 4.45e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele06g1838 PHD 8e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1838 06 12917772 12918683 Lele07g2045 07 13711556 13716575 hybridization
Lele06g1838 06 12917772 12918683 Lele08g1838 08 12772629 12774663 hybridization