Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1835 ATGGAGTCTGCTAGAAATGTTGATATTGATCATGAAAAGAGGCCAAGTATGGAGGAGCTTTATGGTCCAGAGAAGAAGAAGAAGAAGACGATAATTATAAGGTACAAAGAATGCATGAAGAACCATGCAGCTTCAATAGGAGGGAATGCAACAGATGGTTGTGGTGAGTTCATGACTTCAGGAGAAGAAGGCACACCTGAATCTCTCAAATGCTCAGCCTGCAAATGCCACAGAAACTTTCACAGAAAACACTTTGATGAATCTGATGAAGGTTCTGATGATGATACCCCTAACTCTTCTCCATATTATGATTCTCGTCATCTTCATCTTCCAAATAATAATGATGCTGGTGATGATGATCATCAGCATCATCAGGTCATGATCAAACCCTTGTTGACCCATGATTTGTGTCTCACAAGTTATAATAATAAAAGTTGTTCAGATCATGAGTCTGATGAGAAGAGGAAGAGGTTCAGGACCAAGTTCAATCAAGAGCAGAAGGAGAAGATGCTGAGATTTGCAGAGAAAGTTGGGTGGAGGATGCAGAAGGTGGATGAATCCATGGTTCAGCAGTTTTGTGAAGAAGCTGGAATCAAGAGAAGAGTGCTCAAAGTTTGGATGCACAATAACAAAAACAACTTTGCCAAGAGAAAAAACCTTATATCCACTAGCTGTAGCTGA 681 0.4023 MESARNVDIDHEKRPSMEELYGPEKKKKKTIIIRYKECMKNHAASIGGNATDGCGEFMTSGEEGTPESLKCSACKCHRNFHRKHFDESDEGSDDDTPNSSPYYDSRHLHLPNNNDAGDDDHQHHQVMIKPLLTHDLCLTSYNNKSCSDHESDEKRKRFRTKFNQEQKEKMLRFAEKVGWRMQKVDESMVQQFCEEAGIKRRVLKVWMHNNKNNFAKRKNLISTSCS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1835 226 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 34 84 IPR006456 -
Lele06g1835 226 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 35 84 IPR006456 -
Lele06g1835 226 Gene3D - 140 216 - -
Lele06g1835 226 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 213 - -
Lele06g1835 226 MobiDBLite consensus disorder prediction 1 23 - -
Lele06g1835 226 Pfam ZF-HD protein dimerisation region 33 84 IPR006456 -
Lele06g1835 226 MobiDBLite consensus disorder prediction 85 121 - -
Lele06g1835 226 FunFam Zinc-finger homeodomain protein 2 142 216 - -
Lele06g1835 226 SUPERFAMILY Homeodomain-like 142 216 IPR009057 -
Lele06g1835 226 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 155 212 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1835 Lele-ChrLele06 12892175 12892855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1835 26 222 ZF-HD Transcription Factor Family AT2G02540 45.089 3.06e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele06g1835 ZF-HD_dimer 1.4e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1835 06 12892175 12892855 Lele46g0342 46 2316553 2319522 CCT
Lele06g1835 06 12892175 12892855 Lele48g1137 48 16015042 16018391 CCT
Lele06g1835 06 12892175 12892855 Lele07g2042 07 13693008 13694183 hybridization
Lele06g1835 06 12892175 12892855 Lele08g1835 08 12746867 12747547 hybridization