Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1832 ATGGCCACCTCCAGGCGGCTTAGGGCATTCAAGCGATGGATGGCATCCCGGGGCTTCGAAATCAGCGATGGCCTCGAGTTCGTAGACGATCCCGAAAATGGGATTGCGGTGAGAGCTTTGTGCCAATTGAAGGAAGGCGATGTTGTTGCCAAAATACCGAAGGATGCTTGCCTGACGATTAAGACTAGTGGGGCGAGTCAAATGATTGAAGATGCTGATTTGGATGGTAATCTGGGACTAGCAGTGGCTCTGATGTATGAGAGAAGCTTGGGTGAGGAGTCACCATGGGCTGGCTACCTTCAGGTTTTGCCTCACCAAGAATGCCTGCCTTTGGTGTGGACTCTGAACGAAGTAAACGAGCTTTTGAGTGGAACTGAGCTACACAAGATAGTACAAGAGGACAAAGCTCTTATGTATGAGGACTGGAAAGAGAATATTCTACCCGTCTTGGATTTTTCACCTTCAAAGCTTGATCCGAAATCTTTTGGTGTAGAAGAATATTTTGCTGCAAGAAGTCTTATTGCTTCGCGATCTTTTGAGATAGATGATTACCATGGCTCTGGCATGGTTCCCTTGGCAGACCTATTCAATCATAAAACAGATGCTGAGGATGTGCATTTCACGGCAGTACCTTCAAACAATGAATCTGACAATGATGTTGATGGAAATGAGTGTGTAACTGATGAACAAGAATTGGCTAAGAATTCTTCTATGGATGAGACTGAGTTGGATACTGCTCTTATTGAGAAATGCAGTGTTGGTGACTCGGAGTCATCCTCGGTTGTGGGAGATGATATTTCAATGTTGGAGATGATTATGATAAAAGATGTCAGCGTTGGAGCTGAGGTATTTAACACATATGGGTCAATGGGTAATGCTGCTTTACTTCATAGATATGGATTTACTGAGCAAAATAACTCCTATGATATTGTAAACATTGATTTGGAACTTGTTCTTCAGTGGTGTTCTTCTCTGTTTTCAGCTCGATACACTCGAGCAAGAGTCTCTCTCTGGAGAAGGCTGGGCCATTCCGCATGTGTCAGCCAAAACTCGGAATATTTCGAGATATCACCTAATGGAGAGCCACAGATTGAACTACTGATTTTATTATGCATTATGTTATTATCAGAAGATGCCTACCATAAGTTAGACTTATTGGCGTCGATTGCAGGAAATATTCATGAATCAAGTGAAACTTCTCTTTCAGGAGAATGCAATATCTTGACAAAGAAAGCATCTGATATGAGTAAGGAATCGTTGCTGACTAGAAAAGTTTGTGATGCTTTGTTGTCTGTTACTGATATGCGTGAAAGTCTCTATGGTCTGAACTCAATAGAAGATGATATTGAGGCATTAGGTAGGTGTAACTGTGTTAGAGAAAGAAAGCTGTTTCATTTGCTGCGCATTAGTGAAAGGAAGATCCTTGAAAAGCTCAGAAATTATGCTGCCCAAACAATTAGAAATGGTAAGCGAAATTCTGCAAGGAAGAAAATGAAAAGCTAA 1503 0.4185 MATSRRLRAFKRWMASRGFEISDGLEFVDDPENGIAVRALCQLKEGDVVAKIPKDACLTIKTSGASQMIEDADLDGNLGLAVALMYERSLGEESPWAGYLQVLPHQECLPLVWTLNEVNELLSGTELHKIVQEDKALMYEDWKENILPVLDFSPSKLDPKSFGVEEYFAARSLIASRSFEIDDYHGSGMVPLADLFNHKTDAEDVHFTAVPSNNESDNDVDGNECVTDEQELAKNSSMDETELDTALIEKCSVGDSESSSVVGDDISMLEMIMIKDVSVGAEVFNTYGSMGNAALLHRYGFTEQNNSYDIVNIDLELVLQWCSSLFSARYTRARVSLWRRLGHSACVSQNSEYFEISPNGEPQIELLILLCIMLLSEDAYHKLDLLASIAGNIHESSETSLSGECNILTKKASDMSKESLLTRKVCDALLSVTDMRESLYGLNSIEDDIEALGRCNCVRERKLFHLLRISERKILEKLRNYAAQTIRNGKRNSARKKMKS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1832 500 Pfam SET domain 34 288 IPR001214 GO:0005515
Lele06g1832 500 ProSiteProfiles SET domain profile. 23 288 IPR001214 GO:0005515
Lele06g1832 500 PIRSF RMS1_SET 1 486 IPR011383 GO:0016279|GO:0018026
Lele06g1832 500 Gene3D set domain protein methyltransferase, domain 1 3 301 - -
Lele06g1832 500 CDD SET_LSMT 24 302 - -
Lele06g1832 500 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 450 - -
Lele06g1832 500 SUPERFAMILY SET domain 4 210 IPR046341 -
Lele06g1832 500 SUPERFAMILY SET domain 268 307 IPR046341 -
Lele06g1832 500 Gene3D - 304 495 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1832 Lele-ChrLele06 12874452 12877786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1832 1 498 NAC Transcription Factor Family AT3G56570 58.223 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele06g1832 SET 2.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1832 06 12874452 12877786 Lele08g1833 08 12730066 12733432 hybridization