Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1779 ATGCCATTCCCCGAGTTTAAAACAGACCATCCTCGTAATCCGAACTTGGAAAGATTCTCTGGGTTGGTTCCTGAAGCTCAGCACGCCGGAGAGGAAATGGCAACCACTGTTACTGCCACTATTCCTGGAACTTTGTTACCCGTTTCTTTCCGCTACAATGTTACGAGAATCAGAATTAGTGTGGCTAACATTCGAATCAACAGAAGTTTCCTTTCCTCGTCACTCAGAAATGGCTCCGCCTTCGCGCTGGCGTGTTTACCTCATCCTCCTCTTCGTCCTGCTTCTCAATCACCAATCCCATCTTCCAATACCAAACCCACTTCTTCTCTTTCAACTAAGCTCTACGTCAGTGGGCTATCTTTTCGTACCACTGAAGAGAGCCTGCGAAATGCCTTTACGAAGTTTGGTGAACTTGTGGAAGTCAACCTGGTGATGGATAAAATAGCAAATAGACCAAGAGGTTTTGCCTTTCTTCATTACGCAACTGAAGAGGATTCTCAGAAGGCTATTGATGGAATGCATGGGAAGAAACTTGGAGTTCTGGATGAATTTTTAGGCAGTTATACTGATTTCCCTATTCTTGGATGGTAG 591 0.4484 MPFPEFKTDHPRNPNLERFSGLVPEAQHAGEEMATTVTATIPGTLLPVSFRYNVTRIRISVANIRINRSFLSSSLRNGSAFALACLPHPPLRPASQSPIPSSNTKPTSSLSTKLYVSGLSFRTTEESLRNAFTKFGELVEVNLVMDKIANRPRGFAFLHYATEEDSQKAIDGMHGKKLGVLDEFLGSYTDFPILGW 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1779 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 179 IPR000504 GO:0003723
Lele06g1779 196 Gene3D - 90 181 IPR012677 -
Lele06g1779 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 178 IPR000504 GO:0003723
Lele06g1779 196 SMART rrm1_1 113 182 IPR000504 GO:0003723
Lele06g1779 196 PANTHER NUCLEOLAR PROTEIN 8 99 178 - -
Lele06g1779 196 SUPERFAMILY RNA-binding domain, RBD 87 179 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1779 Lele-ChrLele06 12321349 12324066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1779 53 188 Eukaryotic Initiation Factors Gene Family AT1G22760 26.761 4.52e-09 53.5