LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g1778	ATGACAATTCTGTCGTCTGAAATTTTAATCTTTTTGTACCACTGTGAGAATCAAACAGAGAGCACAGTGTCGAACTACTGTGGCATAGTCAGTAAACGTCATCCAGATGGCGGCACAAAATCTGAAAATGTTGTCCGCAGGAAGGATATAACTACTACTGGAGACAATTTTACTCCCAAGGCAAGGAAACCATATACCATTACTAAGCAAAGGGAGAAGTGGACAGAGGAGGAGCATCTGAAGTTCATTGAAGCTTTGAAATTGTATGGCCGTGGTTGGCGTCAAATTGAAGGTACCAAAACTGCAGTTCAGATTCGAAGCCATGCACAGAAGTTCTTCTCTAAGGTTGCGAGGGAATCTGAGGGCAGCCCTGAAAGTTCTTTAAAGCCAATTGACATACCTCCTCCTCGGCCAAAAAGGAAACCGTTGCATCCATATCCTCGCAAATCAGCTGACTCGTACAAAGGACGCTCAAATGAATCAGAAAGATCTCCATCTCCAAACCTGTCAGCTACAGTGAAAGACACCCAATCTCCAACTTCAGTGTTATCTGCATTTGGTTCAGAAGCATTTGGATCAGCATTTTCTGAACGGAATAATAGATGTCCTTCCCCAAATTCCTGCACTACTGACATCCGCTCGGTCAGTTTATCACCAGTTGGAAAAGAAAATGATTGTATTACATCCAATTCATCTGAGGAGGAAGAGAAAGGATATTTAGCTTCAGTCCCATCAGTTGCTGATTTGAAGACAGATCTGTCCCTGAAGGTTGAGTTGACATGCTTGGAAAATGAGAATTATACTAAAGATGCTGCCAACTTGCCACATGTCTCAAGCATTAAGCTTTTTGGAAGAACCGTCTCCTTGACAAATAATCAGAAGTCAGTGAACAATGAGAAAATTAAGTCAGTTATATGTAAGGAGAACCCTTGGTCAGTTGAGTCTGGATTTGATAATTCCTTACCATGCTGGAATTTTACCCCAAGTCTTTCAGATTTAGACCTTGGGCTGCGCAATAAAATTTTAAATCTTGCACCCCTTCATGCCTCCCTCACAGAGAGAACAATTAAGAAGGAAATTCATTGTATTGGTTCTAACGCAGAATCAGTTAGTGAAATGGAAAATGGAGACAAGTTGGATGCTATAGTTTCTCAATGTGAATCATCCCTCAAATCTCCTCGAGGGTTTGTACCATATAAAAGATGTTTAGCTGAGAGAGACATGAATAATGAATTTGTTGATAGGTTTGAAGAGAGGAAGGGACAACGAACTCGAGTGTGCTCGTAG	1287	0.4126	MTILSSEILIFLYHCENQTESTVSNYCGIVSKRHPDGGTKSENVVRRKDITTTGDNFTPKARKPYTITKQREKWTEEEHLKFIEALKLYGRGWRQIEGTKTAVQIRSHAQKFFSKVARESEGSPESSLKPIDIPPPRPKRKPLHPYPRKSADSYKGRSNESERSPSPNLSATVKDTQSPTSVLSAFGSEAFGSAFSERNNRCPSPNSCTTDIRSVSLSPVGKENDCITSNSSEEEEKGYLASVPSVADLKTDLSLKVELTCLENENYTKDAANLPHVSSIKLFGRTVSLTNNQKSVNNEKIKSVICKENPWSVESGFDNSLPCWNFTPSLSDLDLGLRNKILNLAPLHASLTERTIKKEIHCIGSNAESVSEMENGDKLDAIVSQCESSLKSPRGFVPYKRCLAERDMNNEFVDRFEERKGQRTRVCS	428

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g1778	428	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	69	115	IPR006447	GO:0003677
	Lele06g1778	428	MobiDBLite	consensus disorder prediction	115	178	-	-
	Lele06g1778	428	CDD	SANT	73	113	IPR001005	-
	Lele06g1778	428	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	117	IPR017930	-
	Lele06g1778	428	MobiDBLite	consensus disorder prediction	160	178	-	-
	Lele06g1778	428	Pfam	Myb-like DNA-binding domain	71	111	IPR001005	-
	Lele06g1778	428	SMART	sant	70	115	IPR001005	-
	Lele06g1778	428	MobiDBLite	consensus disorder prediction	134	159	-	-
	Lele06g1778	428	SUPERFAMILY	Homeodomain-like	65	117	IPR009057	-
	Lele06g1778	428	ProSiteProfiles	Myb-like domain profile.	66	113	IPR001005	-
	Lele06g1778	428	PANTHER	SWI/SNF COMPLEX-RELATED	45	296	-	-
	Lele06g1778	428	Gene3D	-	73	117	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g1778	Lele-ChrLele06	12317900	12320044	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Lele06g1778		Myb_DNA-binding	1.5e-09	CL0123