Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1757 ATGTCATCAGTTCCAAGCTCCGAGCAGTTTTCCAACACAGAGAATGGCACTAATAACAGTAGCACTGCAAACAAACGGAAGAGAAGACCCGCGGGAACACCAGATCCGGATGCGGAGGTGGTGTCGCTGTCGCCGAAGACGCTGTTGGAATCGGACCGGTACGTGTGCGAGATCTGTAACCAGGGGTTTCAGAGGGACCAGAACTTGCAGATGCACAGGAGGAGGCATAAGGTTCCATGGAAGCTGCTCAAGAGGGAGACGCCGGTGGTGAGGAAGAGAGTGTTTGTGTGCCCGGAGCCGACCTGCTTGCACCATGACCCTTGCCACGCCCTCGGCGACCTCGTCGGAATCAAGAAACACTTCCGCCGGAAACACAGCAACCACAAACAATGGGTCTGCCACCGCTGCTCCAAGGCTTACGCCGTCCAGTCCGATTACAAGGCTCATCTCAAGACCTGTGGCACTCGCGGCCATTCCTGTGATTGTGGCCGAGTCTTCTCCAGGGTGGAGAGCTTCATCGAGCACCAAGATGCGTGCAATATGGGGCGACTCCGACCGGAGTCGCAGCCGCAGCAACCGGTGTGTCTGTCTCGAACTGCGTCGAGCCCGAGTCCGTCGAGCGAGACCAATTTCAGCGCCGGTCCAGCATGGCCACCACCAGGTTTGGTGATACCAAAGCCAACAACGGCGGAACCCACATTCTTCCATAACAATAATAACCCTATCACCGATCAAACCTTATCCAAGACCAACAATCAAAACAACAACAAGAGGCACTACCCAAACTTGGACCTTCAGCTCTCAACAGCCACGCCCCACGTCAACAACAACGTCGTCGTCGGAAGAGACGACACCCATTCGACCCAGTTACAGCTCTCAATCGGGTCTTCTGACATGAGCGATAAGAACGAATCGAATAGGAATTCATCACCGAAGGAGAGCAGTAACAGCAGCGATAAGCCGGCGGCGGCTTTGATGGTGGAGAAAGCGTACGCGGAGGAGGCGAGGAAAGAAGCAAAGAGGCAGATGGAGGCGGCGGAGCAAGAGTTCGCAAACGCCCGGAGAATAAGACAGCAAGCTCAAGCCGAACTGGATAAAGCATATGCTTTGAAAGAACAAGCGATTAAACAGATCAATTCCACCATGCTTCAGATCACATGTCAAGCTTGTAAGCAGCAGTTTCAACAGCAAGCTCAAAAATTAATAACGGAAGGTGGCCAAGTATTAGACAACAACAACAATAACGGGAAAGAAAACCACTAA 1263 0.5297 MSSVPSSEQFSNTENGTNNSSTANKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPQQPVCLSRTASSPSPSSETNFSAGPAWPPPGLVIPKPTTAEPTFFHNNNNPITDQTLSKTNNQNNNKRHYPNLDLQLSTATPHVNNNVVVGRDDTHSTQLQLSIGSSDMSDKNESNRNSSPKESSNSSDKPAAALMVEKAYAEEARKEAKRQMEAAEQEFANARRIRQQAQAELDKAYALKEQAIKQINSTMLQITCQACKQQFQQQAQKLITEGGQVLDNNNNNGKENH 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1757 420 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Lele06g1757 420 SMART c2h2final6 54 76 IPR013087 -
Lele06g1757 420 SMART c2h2final6 131 158 IPR013087 -
Lele06g1757 420 SMART c2h2final6 95 125 IPR013087 -
Lele06g1757 420 MobiDBLite consensus disorder prediction 293 321 - -
Lele06g1757 420 MobiDBLite consensus disorder prediction 1 27 - -
Lele06g1757 420 MobiDBLite consensus disorder prediction 183 260 - -
Lele06g1757 420 Coils Coil 322 377 - -
Lele06g1757 420 SUPERFAMILY beta-beta-alpha zinc fingers 51 77 IPR036236 -
Lele06g1757 420 Gene3D Classic Zinc Finger 42 127 - -
Lele06g1757 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Lele06g1757 420 MobiDBLite consensus disorder prediction 293 322 - -
Lele06g1757 420 MobiDBLite consensus disorder prediction 185 213 - -
Lele06g1757 420 MobiDBLite consensus disorder prediction 231 260 - -
Lele06g1757 420 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 391 IPR031140 -
Lele06g1757 420 MobiDBLite consensus disorder prediction 1 43 - -
Lele06g1757 420 FunFam protein indeterminate-domain 12-like 33 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1757 Lele-ChrLele06 12094786 12096923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1757 14 398 C2H2 Transcription Factor Family AT2G01940 57.468 1.53e-145 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele06g1757 None None None