Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1742 ATGGTTCTAGGATGGCGAAGGAGAAAGAACGCCCGTCGCAACGACAAACTTCATCTCGAGCTCGTCGTTCCCAACCACTTCCGGTGTCCGATTTCCCTCGATTTGATGAAAGATCCTGTCACATTGTCCACCGGAATCACCTACGATCGTGAAAGCATCGAAAGGTGGTTCCTTGACGGAAATTTCACTTGCCCCGTTACCAATCAGATTCTTCGGAGCTTCGATCTCATTCCTAATCACACTCTTCGCATCATGATTCAGGACTGGTGTGTTGAAAATCGACAACATGGGATTGAGAGAATCCCCACTCCGAGAATTCCCATCTCCCCAATCGAAGTCGCAGAGCTTCTTCTTCATTTGAAATCGTCGGCGAGGCTTTTGGATCAGTACGGTTGTCTCGAACTGGTTCAGAAAATGGAGAAATGGGGTGAAGAGAGCGAGAGGAACAAGAAGTGCATAGTTGAAAATGGAGCTACTGCTGGCCTGGCCTCCGCTTTTGATTCCTTCGCGAATGATTCAATTGAGAAGAATCTGAGTGTTTTGGAAGAGATTTTGTCCGCTCTAAATTGGATGTTCCCACTTCAAATGGAAGCCCAGAAATCTTTGGGTTCACAAGCTTCGTTACGTTGCATGGTGTGGTTTCTGAAACATCAAGACCTTGCAGGGAAAGACAAGTCCATTGTTGCTCTCAGGGAGCTTTTATCTTTTGGAAACGAACAACATTTGAATGTTCTGGCAGAAATTGAAGGAGTCAACGAATTATTGGTGGAATTAATCACGAAAAGACTGACTCCAACCATTACAAAAGCTTCATTAGCGGTAGTTTTCTATTTGGTTTCATCATCTTCTTCTTCCTCAAGAGACAAGATGAAACAGAGATTCATCGAACTGGGGTTGGTGTCTTGTTTACTTGAGATTCTCCTGGATTCAGAAAGAAGCCTCTGTGAGAAGGCTTTGGCAATTTTGGATTCACTCTGCTCTTGTAAAGAAGGCAGAGAGAAAGCTTACAGGAACGCGTTGACTATCCCTGTGTTGGTGAAGAAGATTCTGAGAGTTTCAGCCATGGCTACAGATTGCTCTGTTTCTGCAATATGGAAGCTGTGCAAGAATGTTGAAGAGAAAGAAGCGGAAGAGGAAGAAGAAGAAGAAGAAGAAGGAAGTGTTCTGAAAGAGGCACTGCTAGTTGGTGCGTTTCAGAAGCTATTGGTGGTGTTGCAGATTGGATGCGGAGATGAAACGAAGGTGAAAGCAACTGAACTTCTCAAACTGCTGAATCAACACAGGGCAGGGGAGGAGTGTGTAGACTCAGATTTCAAGAACCTCAAGAGATCACATTAA 1338 0.4462 MVLGWRRRKNARRNDKLHLELVVPNHFRCPISLDLMKDPVTLSTGITYDRESIERWFLDGNFTCPVTNQILRSFDLIPNHTLRIMIQDWCVENRQHGIERIPTPRIPISPIEVAELLLHLKSSARLLDQYGCLELVQKMEKWGEESERNKKCIVENGATAGLASAFDSFANDSIEKNLSVLEEILSALNWMFPLQMEAQKSLGSQASLRCMVWFLKHQDLAGKDKSIVALRELLSFGNEQHLNVLAEIEGVNELLVELITKRLTPTITKASLAVVFYLVSSSSSSSRDKMKQRFIELGLVSCLLEILLDSERSLCEKALAILDSLCSCKEGREKAYRNALTIPVLVKKILRVSAMATDCSVSAIWKLCKNVEEKEAEEEEEEEEEGSVLKEALLVGAFQKLLVVLQIGCGDETKVKATELLKLLNQHRAGEECVDSDFKNLKRSH 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1742 445 Pfam U-box domain 23 94 IPR003613 GO:0004842|GO:0016567
Lele06g1742 445 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Lele06g1742 445 FunFam RING-type E3 ubiquitin transferase 23 94 - -
Lele06g1742 445 SUPERFAMILY ARM repeat 175 381 IPR016024 -
Lele06g1742 445 CDD RING-Ubox_PUB 27 69 IPR045210 -
Lele06g1742 445 PANTHER WDSAM1 PROTEIN 20 435 IPR045185 GO:0061630
Lele06g1742 445 SUPERFAMILY RING/U-box 22 99 - -
Lele06g1742 445 Coils Coil 364 391 - -
Lele06g1742 445 Gene3D - 284 436 IPR011989 -
Lele06g1742 445 Gene3D - 144 283 IPR011989 -
Lele06g1742 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 100 IPR013083 -
Lele06g1742 445 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1742 Lele-ChrLele06 11946541 11947878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1742 5 443 U-box Gene Family AT5G37490 44.000 3.19e-118 350