Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1738 ATGGTGTACCAGAGGTTATTTAGCCTATGCTCAAATATGGATATGGAATCTGAGAGGCTTCACAGTGCTGAGAACAATGAACCAGCTCCAGAAAAGGACGACGTCCTCAAGAGAAGAATCTCTAGCCACCCTCTCTATGAACTCCTTGTTCAAGCTCACTTGCAGTGTTTGAAGGTTGGTCAAATTTCCAACTTGGAGAGAGAGCAGGAGGAGATGGATCAGCAGCTAACAACGAACAGCAAAAGCTTGGATATGTTCAATGAGCCAGAGCTTGATCTCTTCATGGAAGCATATTGCATGGCACTGGGGAAGCTGAAGGAAGCAATGGAGGAACCACAACAAAAGGCGATGACTTTCATAAACAATATGCAGTCACAACTGAAGGAGCTCACTGTTCATCAGCCACCTGATGCGTCTCCCACAACTTCTTCAGAATGA 438 0.4543 MVYQRLFSLCSNMDMESERLHSAENNEPAPEKDDVLKRRISSHPLYELLVQAHLQCLKVGQISNLEREQEEMDQQLTTNSKSLDMFNEPELDLFMEAYCMALGKLKEAMEEPQQKAMTFINNMQSQLKELTVHQPPDASPTTSSE 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1738 145 Pfam KNOX2 domain 87 131 IPR005541 GO:0003677|GO:0005634
Lele06g1738 145 SMART KNOX2_2 81 132 IPR005541 GO:0003677|GO:0005634
Lele06g1738 145 Pfam KNOX1 domain 36 60 IPR005540 GO:0003677|GO:0005634
Lele06g1738 145 SMART KNOX1_2 34 74 IPR005540 GO:0003677|GO:0005634
Lele06g1738 145 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 21 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1738 Lele-ChrLele06 11906293 11907491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1738 34 130 Homeobox Transcription Factor Family AT4G08150 40.777 2.49e-15 69.7