Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1736 ATGCTAGAAAGGACAGCAAAAATGGATTTCCAGTGTGGTACAGAGGAAGAAAAGAACGAAGGACAGTGTGGTGAAGGGGTCGCTGCCAATGGAGTAGCCTCACTTCTTCCTTCTCCGGGTCGGTGTCTCAGACCCGAACAGAACTTCTTTAGTCCCGGCGAAGTTGAACATTTCTCATCCACCAACACCAACTCCAGAAAAATCTGCCAGTTACAGGCAACAATCAGTGATCAGAATCGGGCGCAACTTATACAATTTTGGGGCTTTGTCTGTGATTCAAGCCTTAGCTCAGTGTGGGCGGAGCCTAGCTTTGTGTGTAGAACATCACATACAATGAGCTTGCAAGTCCGACAAGAAAGAAGGGATCGATCCAGGGTTCCTGCCCAAGGTTCTCGTCAGGAATGGGTTCCAAGAGCATCTGTCGCCCCCACCACCTTGAATTCCCCTCCTTCAAATTATCCAATGGATCAAAATGGTAATGCTGGTTCCTCAAATAATGATGTTGCTCCACCAGCAAATCGGCATAGAAGCATTCATGGGTCAAGGGGTCACATAAGTCGGCCTATGAATCATAGAAGGGAAAGGGAAAAGGGAAGGAATGAGAATCAGGTGGTGCAACGTGCAAGGGACTCAAATTTGCCTCAATTATTGCAAGAGATCCTGGATAAGCTTATGAAAGGTACTGTAGAATGCATGATTTGCTATGACATAGTCTGTAGATCTGCACCCATCTGGTCTTGCTCAAGCTGCTACTCAATCTTTCACCTGAATTGTGTAAAGAAGTGGGCTCGAGCACCTACTTCTGTTGATGTGTCTGCAGAAAAGAATCAAGGATTTAATTGGCGGTGTCCTGGGTGTCAATCTGTACAGCTGACGTCATCAAGGGAGGTTAGGTATGTATGCTTTTGTGGAAAGAGGCCAGACCCACCATCTGATTTGTATCTCACACCACATTCCTGTGGAGAACCATGTGGGAAGCCTCTTGAGAGGGAGATGTTGGTTAATGGGGGGAGAGGGAGCAAGGAAGACCTTTGCCCTCATGTTTGTGTTTTGCAATGCCATCCAGGTCCATGCCCTCCATGTAAAGCATTTGCACCACCGCGTTTGTGTCCTTGTGGGAAGAAAACTATTACCACAAGATGCTCTGATCGGTCCTCCCTTCTTACTTGTGGTCAGCATTGCGAAAAGCTTCTTGAGTGTGGGCGTCATAGGTGTGAACATATTTGCCATGTGGGTCCGTGTGACCCATGTCAGGCTCTAATCAATGCCTCTTGTTTCTGCAACAAGAAGGCGGAGGTTATTCTTTGTGGGGACTTGGCTGTGAAGGGTGAAATTAAAGCTGAAGGTGGTGTATTTTCTTGTGGTTCCAATTGTGGGAAGAAGCTTAGCTGTGGTAATCATGTCTGCAATGAGATTTGTCATCCAGGCAACTGTGGGGAGTGTGAATTCTTACCAAGCCAGATTAAGACATGCTGTTGTGGGAAAACAAAATTGGAGGAGGAACGGCAGAGTTGTCTAGATCCAATACCAACCTGTTCACAAGTATGTGACAAGCCTCTTCCTTGTGGGTTGCATCATTGTAGGGAGGCATGTCATCCTGGGGATTGTTCACAATGTTTGGTTCTAGTCTCCCAGAAGTGTCGGTGTGGTTCAACTTCCCGAACTGTGGAGTGCTATAAGGCAATGAAGGAGAATGAGTCATTTACTTGTGAAAGATCTTGTGGGTGGAAAAAAAACTGTGGAAGGCATCGATGTAGTGAACGGTGTTGTCCGCTTTCTAATCCAAATAATTGTCTAAATGGGGAGTGGGATCCTCACTTTTGTACCATGCCATGTGGAAAGAAGCTAAGGTGCGGGCAACATGCATGTGAAGCGCTATGTCACAGTGGCCATTGTCCATCTTGTCTCGAAACTATCTTCACTGATTTGACTTGTGCTTGTGGTAGGACTTCAATCCCTCCTCCATTGCCTTGTGGAACACCCTCTCCCTCATGTCAACTTCCATGCTCAGTTCCTCAACCTTGTGGCCATTCATCCTCCCACAGCTGCCACTTTGGAGATTGTCCCCCTTGTTCAGTGCCTGTGGCAAAAGAATGCATTGGTGGGCATGTGGTTCTTAGGAATATACCTTGTGGATCAAAGGATATTAGATGTAATAAACTCTGTGGGAAGACCAGACGTTGTGGTTTACATGCTTGTGGCAGAACATGTCACTCTCCACCTTGTGATCCATCTGGTTGTGACCAAGGTCTCCGAGCTTCTTGTGGTCAAACATGTGGTGCTCCAAGGAGAGACTGCAGGCATACATGTACAGCTCCATGTCACCCTTCGGCACCGTGCCCTGACATAAGATGTGAGTTCTCTGTTACAATTACCTGTTCTTGTGGCCGTATAACAGCAAATGTTCCTTGTGGTGCTGGCGGTTGTAGTGGTAATTATAATGTGGATTCCATACATGAAGCTTCCATAATTCAAAAGTTGCCTGTGCCACTTCAACCAGTAGAAAACAGTAAATCGATTCCCCTTGGACAAAGGAAGCTGACATGTGATGATGAATGTGCTAAGTTGGAGCGTAAAAAGGTTCTTGCTGATGCTTTTGACGTCACCACTCCAAACTTGGATTCTCTTCATTTTGGTGAGAACTCTACAACCGCTGAATTGCTTTCTGACATGCTCAGGCGGGATCCTAAGTGGGTTTTGTCTGTGGAGGAGAGATGCAAATTTTTAGTTCTTGGCAAGAGTAGAGGAGTAACACATGGTTTAAAAGTCCATGTTTTCTGTCCTATGCTGAAGGATAAGAGAGATGCAGTGAGGGTTATTGCTGAGAGATGGAAGTTGGCTGTGAATGCTGCTGGTTGGGAGCCAAAGCGTTTTGTCATAGTTCATGTTACTCAGAAGTCAAAGGCTCCTCCCCGGGTGCTTGGGGTTAAGGGTACCACAACAATAAATGCACCCTTGCCTCTACAATTTGATCCGTTAGTAGACATGGATCCCTGTCTTGTCGTCTCCTTTCCAGACTTACCAAGAGAAGCCCATATAAGTGCTTTAGTATTGAGGTTTGGTGGTGAATGTGAACTTGTTTGGTTGAATGATAAAAATGCATTGGCTGTTTTCCATGATCCTAGCCGAGCTGCAACTGCGATGAGGAGGTTGGATAATGGAACAGCTTATCATGGGGCTGTGGTGGCTGTACCAATCGCTGGGGCATCAGCAACATCGGCCACTACTAATGCATGGGGAGGAGCTGGGACTTTGAAAGAAGGAGGAGCGCTGGCAGCATTGAAGGGGAATTCATGGAAAAAGGCAGTGGTTCAAGAGCCTGGTTGGAGAGAAGATTCTTGGGGTGATGAAGAGTGGACTACTGGTTCTGCTAATCTCCAGCCTTCTGCCTGGACGAGAGAAACACCTAAAGTCCCAATCACTGCGTCATCGAATCGGTGGAGTGTCTTGGACCAAGAATCATCTTCAAGCTCAGCTGCTGCAACCATTAGAATTGAAGTTTCTCGGAAGCACTCGGCAACTTCATCTTCTGTCCCAAAGCTGGAATCTGATTCCGGTGGTTCTGTTCCAGGACAGCATCAAGGAAACGCTAATGCAACAGAAGTTTCTGAAGTAGTAGATGATTGGGAGAAAGCTTATGAATGA 3645 0.4653 MLERTAKMDFQCGTEEEKNEGQCGEGVAANGVASLLPSPGRCLRPEQNFFSPGEVEHFSSTNTNSRKICQLQATISDQNRAQLIQFWGFVCDSSLSSVWAEPSFVCRTSHTMSLQVRQERRDRSRVPAQGSRQEWVPRASVAPTTLNSPPSNYPMDQNGNAGSSNNDVAPPANRHRSIHGSRGHISRPMNHRREREKGRNENQVVQRARDSNLPQLLQEILDKLMKGTVECMICYDIVCRSAPIWSCSSCYSIFHLNCVKKWARAPTSVDVSAEKNQGFNWRCPGCQSVQLTSSREVRYVCFCGKRPDPPSDLYLTPHSCGEPCGKPLEREMLVNGGRGSKEDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSDRSSLLTCGQHCEKLLECGRHRCEHICHVGPCDPCQALINASCFCNKKAEVILCGDLAVKGEIKAEGGVFSCGSNCGKKLSCGNHVCNEICHPGNCGECEFLPSQIKTCCCGKTKLEEERQSCLDPIPTCSQVCDKPLPCGLHHCREACHPGDCSQCLVLVSQKCRCGSTSRTVECYKAMKENESFTCERSCGWKKNCGRHRCSERCCPLSNPNNCLNGEWDPHFCTMPCGKKLRCGQHACEALCHSGHCPSCLETIFTDLTCACGRTSIPPPLPCGTPSPSCQLPCSVPQPCGHSSSHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRRCGLHACGRTCHSPPCDPSGCDQGLRASCGQTCGAPRRDCRHTCTAPCHPSAPCPDIRCEFSVTITCSCGRITANVPCGAGGCSGNYNVDSIHEASIIQKLPVPLQPVENSKSIPLGQRKLTCDDECAKLERKKVLADAFDVTTPNLDSLHFGENSTTAELLSDMLRRDPKWVLSVEERCKFLVLGKSRGVTHGLKVHVFCPMLKDKRDAVRVIAERWKLAVNAAGWEPKRFVIVHVTQKSKAPPRVLGVKGTTTINAPLPLQFDPLVDMDPCLVVSFPDLPREAHISALVLRFGGECELVWLNDKNALAVFHDPSRAATAMRRLDNGTAYHGAVVAVPIAGASATSATTNAWGGAGTLKEGGALAALKGNSWKKAVVQEPGWREDSWGDEEWTTGSANLQPSAWTRETPKVPITASSNRWSVLDQESSSSSAAATIRIEVSRKHSATSSSVPKLESDSGGSVPGQHQGNANATEVSEVVDDWEKAYE 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1736 1214 CDD NF-X1-zinc-finger 512 560 - -
Lele06g1736 1214 MobiDBLite consensus disorder prediction 1167 1201 - -
Lele06g1736 1214 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 134 1117 IPR034078 GO:0003700
Lele06g1736 1214 Pfam NF-X1 type zinc finger 347 362 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 Pfam NF-X1 type zinc finger 522 539 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 Pfam NF-X1 type zinc finger 580 591 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 Pfam NF-X1 type zinc finger 618 635 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 Pfam NF-X1 type zinc finger 759 784 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 Pfam NF-X1 type zinc finger 464 481 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 Pfam NF-X1 type zinc finger 728 744 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 Pfam NF-X1 type zinc finger 400 418 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 Pfam NF-X1 type zinc finger 675 692 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 CDD NF-X1-zinc-finger 608 660 - -
Lele06g1736 1214 MobiDBLite consensus disorder prediction 1118 1136 - -
Lele06g1736 1214 CDD NF-X1-zinc-finger 454 499 - -
Lele06g1736 1214 CDD NF-X1-zinc-finger 320 383 - -
Lele06g1736 1214 SUPERFAMILY RING/U-box 223 290 - -
Lele06g1736 1214 CDD NF-X1-zinc-finger 390 438 - -
Lele06g1736 1214 CDD NF-X1-zinc-finger 665 713 - -
Lele06g1736 1214 ProSiteProfiles Zinc finger PHD-type profile. 228 289 IPR019787 -
Lele06g1736 1214 SMART znfxneu3 618 637 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 SMART znfxneu3 522 541 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 SMART znfxneu3 580 610 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 SMART znfxneu3 464 483 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 SMART znfxneu3 400 419 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 SMART znfxneu3 728 749 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 SMART znfxneu3 675 693 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 SMART znfxneu3 766 787 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 SMART znfxneu3 345 363 IPR000967 GO:0005634|GO:0008270
Lele06g1736 1214 MobiDBLite consensus disorder prediction 138 171 - -
Lele06g1736 1214 CDD NF-X1-zinc-finger 718 775 - -
Lele06g1736 1214 MobiDBLite consensus disorder prediction 113 207 - -
Lele06g1736 1214 MobiDBLite consensus disorder prediction 1106 1136 - -
Lele06g1736 1214 ProSiteProfiles Zinc finger RING-type profile. 231 287 IPR001841 -
Lele06g1736 1214 MobiDBLite consensus disorder prediction 1167 1214 - -
Lele06g1736 1214 MobiDBLite consensus disorder prediction 114 128 - -
Lele06g1736 1214 CDD NF-X1-zinc-finger 755 806 - -
Lele06g1736 1214 CDD RING-CH-C4HC3_NFX1 230 287 - -
Lele06g1736 1214 MobiDBLite consensus disorder prediction 187 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1736 Lele-ChrLele06 11889106 11895454 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lele06g1736 zf-NF-X1 1.1e+02 No_clan