Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1700 ATGGACCCTTCCTCGATCCCTCCTCCGTCCTCCTTTCCGGCTCCAATCTCTCTCTTCCCCGTCAACTATGTTGCTGTCGCTGCCTCCAACACCAGCACCACCACCGCAACCGCAGCCGCTAATTCGGCTCCGGCTGCTGCTCCTTCTGATGCAGATTCCACCCAGCCATCTGCTCCCACTGCGAACCACCCTCCTTATTCTGAGATGATTTATGCAGCAATTGAGGCGCTGAAGGAGAAAAAAGGGTCTAGCAAGAGGGCTATTGCCAAATACATAGAGACCGCTTATCCTAACCTTCCACCGACTCACCCTGCTTTGTTGACCTACCACCTTCAGCGCTTAAAGAACAATGGACTCCTTGTTATGGTCAAAAACTCTTATAAACTTCCTAGATCTGATGGTTCTCCGTCTACTGCGCAGAGAGGACGTGGCAGACCACCGAAGCTCAAGCCTCAGCCGCAGGGTCAGCCCCAGCTTCAGGCTTCGGGTCAGCCAGAGCAGCAGCAGCCGGTGTCCATGCCCAACGCGCCGCAAAATCTGCAAAATGCTGAGCCTGTTTGGGTTGCCCTAGGGCTCGCTGATGAGCCCACCGAAGTGAAGAAACGAGGCCCAGGCCGTCCTCGCAAGAGTGCCGTAGTAGCAGAGGGGGGTGCTCTACCTGGAACGGCTGCTCGGAGAGGTCGTCCACCTGGAACCGGGAGATCTAGGTTGGCAAAGAAGACCGGGCGTCTTCCGAAGCCGAAATCTGTTATGGCAATCTCTAATGGGATGAAGCGTCGACCTGGTAGGCCGCCAAAAATCCAATCTAAACCCACGGTGATTCCTTTTGCCGCTCCCGCCTCTGCTCCTCAAGGTCCACCTACTGCACTCACCGATCAGGAAGGAACTGTACCGGATGCTAATGAACCAATTCTCGCTCCTAGGCGTAGAGGGCGTCCGAAGAAGTATGGAGTGCAAGCTCCCGGAGTTGCTTCTCAAACTATTGGCCGTGGTCGAGGCCGTGGACGGGGACGTGGGCGCGGTGCCTATCGTAACTCTACTGGAAGACCCGTTGGCCGGCCTAGGAAGGAAACAGCTCCTGATGCTGCTGCACAAAAAGCTGGTAATGAAGAGTTCAAGAGGAAACTTGAATATTTTCAATCCAAGGTGAAGGAGTCTCTTGCTGTGATTAAGCCTCATTTCAATCATGAAAGCCCGGTCACTGCAATTGCGGCAATCCAAGATTTAGAAATTCTGGCAACCCTGGACCTTAATGCACCGTTGAATGATGATACACAGCCAGCACAGCAAGTTCCTCAGGTTCAAGGGCAGCCACTGCCGGCGCTGCAGCAGCAAACGGAACAGCCAGAGTTTCAACAGCAGCAGCAAATGCCACCACCACAGATGTATAGGCATCAGTTGCCACAGTCTCATGTTTTTCCTCAGGCATATCAGCAGCCACAGAGTTTCCAACAGCAACTGCCGCAGTCTCAGCTTTATCAACAGCAAATGCAGCATGTACCGATGCAGTCACAGCAGTCGCAATTGTTTCATCCACATGCATGA 1545 0.5366 MDPSSIPPPSSFPAPISLFPVNYVAVAASNTSTTTATAAANSAPAAAPSDADSTQPSAPTANHPPYSEMIYAAIEALKEKKGSSKRAIAKYIETAYPNLPPTHPALLTYHLQRLKNNGLLVMVKNSYKLPRSDGSPSTAQRGRGRPPKLKPQPQGQPQLQASGQPEQQQPVSMPNAPQNLQNAEPVWVALGLADEPTEVKKRGPGRPRKSAVVAEGGALPGTAARRGRPPGTGRSRLAKKTGRLPKPKSVMAISNGMKRRPGRPPKIQSKPTVIPFAAPASAPQGPPTALTDQEGTVPDANEPILAPRRRGRPKKYGVQAPGVASQTIGRGRGRGRGRGRGAYRNSTGRPVGRPRKETAPDAAAQKAGNEEFKRKLEYFQSKVKESLAVIKPHFNHESPVTAIAAIQDLEILATLDLNAPLNDDTQPAQQVPQVQGQPLPALQQQTEQPEFQQQQQMPPPQMYRHQLPQSHVFPQAYQQPQSFQQQLPQSQLYQQQMQHVPMQSQQSQLFHPHA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1700 514 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 62 131 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele06g1700 514 CDD H15 60 139 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele06g1700 514 Gene3D - 59 140 IPR036388 -
Lele06g1700 514 MobiDBLite consensus disorder prediction 423 514 - -
Lele06g1700 514 PANTHER HISTONE H1 37 268 - -
Lele06g1700 514 MobiDBLite consensus disorder prediction 127 370 - -
Lele06g1700 514 MobiDBLite consensus disorder prediction 34 65 - -
Lele06g1700 514 PRINTS AT-hook-like domain signature 305 316 IPR017956 GO:0003677
Lele06g1700 514 PRINTS AT-hook-like domain signature 346 356 IPR017956 GO:0003677
Lele06g1700 514 PRINTS AT-hook-like domain signature 140 150 IPR017956 GO:0003677
Lele06g1700 514 MobiDBLite consensus disorder prediction 154 182 - -
Lele06g1700 514 FunFam Histone H1.2 59 139 - -
Lele06g1700 514 MobiDBLite consensus disorder prediction 471 514 - -
Lele06g1700 514 MobiDBLite consensus disorder prediction 34 62 - -
Lele06g1700 514 PRINTS Histone H5 signature 197 216 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele06g1700 514 PRINTS Histone H5 signature 49 70 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele06g1700 514 PRINTS Histone H5 signature 76 93 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele06g1700 514 SMART h15plus2 60 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele06g1700 514 SMART AT_hook_2 307 319 IPR017956 GO:0003677
Lele06g1700 514 SMART AT_hook_2 201 213 IPR017956 GO:0003677
Lele06g1700 514 SMART AT_hook_2 223 235 IPR017956 GO:0003677
Lele06g1700 514 SMART AT_hook_2 140 152 IPR017956 GO:0003677
Lele06g1700 514 SMART AT_hook_2 258 270 IPR017956 GO:0003677
Lele06g1700 514 SMART AT_hook_2 348 360 IPR017956 GO:0003677
Lele06g1700 514 MobiDBLite consensus disorder prediction 423 463 - -
Lele06g1700 514 Pfam linker histone H1 and H5 family 63 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele06g1700 514 SUPERFAMILY "Winged helix" DNA-binding domain 59 136 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1700 Lele-ChrLele06 11543875 11547552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1700 50 144 Single Myb Histone (SMH) Gene Family AT1G49950 34.653 9.75e-07 48.9