LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g1696	ATGAGGAATTTCAAAGCGGTTGTTTCCATGAGAAGGCCCAGCTCTCAGAAACCAGATTCTCAGAAACGATCATGGTCCAAGGAAGAAGACCAGAAACTTATTGATTATATCCAAAAACATGGTGAAGGTTGCTGGCCTTCACTTCCTCAGGCTGCAGGGTTGCGTCGCTGCGGAAAAAGCTGTAGGCTGAGATGGTTAAATTATCTGAAGCCAGACATTAAACGAGGAGACTTCGGAGAAGACGAAGAGGACTTGATCATCAGGCTTCATGCTCTTCTTGGCAACCGGTGGGCACTGATAGCGGGAAGATTACCAGGAAGAACTGATAACGAGGTGAAGAATTACTGGAACTCACACATAAGAAAGAAGCTTATTCAAACGGGTCATAATGTTGGTGATCGCTTTAAAGGCTCTACACTTATTAATGGAACTGCAAAATCGTCCATCATTAACAAACCTAGTAACAATCACAAGGATGACGAAGCTTCCAATCCAGCAGTCAAGTTGCATTCTACTGACGACAACGATGAAGATGACGACCATCATCAGGTGTTTCAGTCAACAAGAAGCAAGGCCAAGTTCAACCTCAACGCTTTTCCAGAGTTGAATCTTGATCTCACACTCGCTACTACTTATCATTGA	642	0.4377	MRNFKAVVSMRRPSSQKPDSQKRSWSKEEDQKLIDYIQKHGEGCWPSLPQAAGLRRCGKSCRLRWLNYLKPDIKRGDFGEDEEDLIIRLHALLGNRWALIAGRLPGRTDNEVKNYWNSHIRKKLIQTGHNVGDRFKGSTLINGTAKSSIINKPSNNHKDDEASNPAVKLHSTDDNDEDDDHHQVFQSTRSKAKFNLNAFPELNLDLTLATTYH	213

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g1696	213	FunFam	MYB transcription factor	76	131	-	-
	Lele06g1696	213	MobiDBLite	consensus disorder prediction	1	28	-	-
	Lele06g1696	213	Gene3D	-	77	167	-	-
	Lele06g1696	213	MobiDBLite	consensus disorder prediction	146	181	-	-
	Lele06g1696	213	Gene3D	-	22	74	-	-
	Lele06g1696	213	SMART	sant	21	71	IPR001005	-
	Lele06g1696	213	SMART	sant	74	122	IPR001005	-
	Lele06g1696	213	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	17	69	IPR017930	-
	Lele06g1696	213	ProSiteProfiles	Myb-like domain profile.	17	69	IPR001005	-
	Lele06g1696	213	Pfam	Myb-like DNA-binding domain	22	69	IPR001005	-
	Lele06g1696	213	Pfam	Myb-like DNA-binding domain	75	119	IPR001005	-
	Lele06g1696	213	FunFam	MYB-related transcription factor	21	74	-	-
	Lele06g1696	213	SUPERFAMILY	Homeodomain-like	20	116	IPR009057	-
	Lele06g1696	213	ProSiteProfiles	Myb-like domain profile.	70	120	IPR001005	-
	Lele06g1696	213	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	70	124	IPR017930	-
	Lele06g1696	213	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	10	178	-	-
	Lele06g1696	213	CDD	SANT	24	69	IPR001005	-
	Lele06g1696	213	CDD	SANT	80	120	IPR001005	-
	Lele06g1696	213	MobiDBLite	consensus disorder prediction	153	181	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g1696	Lele-ChrLele06	11488748	11491866	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g1696	11	209	MYB Transcription Factor Family	AT4G09460	47.596	5.00e-63	194

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele06g1696		Myb_DNA-binding	9e-15	CL0123