Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1666 ATGTCTGTTGTTTCAAATGCTTCTGCAACTGCCGAGCACATAAAATGTAGAAAGCCAAGAAGCCATTTTGGTAATCTCATTCAAGAAGCAGATCCGAATCCGGCAATCCCTTCGATAATCGAGTTCACTCGCTGCAAATCAACCATTTCGTCTCTTCGTCTCTCTAATTTCTCTAACAACGCGTCGAATGAGAGTATACAGGGAAACGGCATCAACATCGGCGCAAGTGGCAGTGGCAATGGCCGTAGCAAGAAGAAGAACAATTTCTCTGCGGCTGCAACCTTCAGAGGACTCGGATGCACCGCCGGTGCGTCACAGCAGGTGTCGGTTCCGGCGGTGATTAGGTCGTCCGCGGACTGGCAAGGAAAGAAGGCTAGAAAGAAGAAGCATAAAAGAAATAGCACCAAGACCTGTCCTGGAGTTCTTGATGGTTCTGGTTCTGCTAATTGCGTTGATTTTCAAGACGTCTGGTGCGGTCCTGGAATTGGGTTTTCGGCAGATGCTGCTGCGTCTGTTGATTGCGTCGTGGCGAGGAAGAATGTTTCTACGAGAGGGAAGATTGATCTGGAGAGGATGACTCACAGACAGCGTGTTTCCTATCTTGGAAGACGAACAGTTAACCCAGAAACCATCTCGTTTCTGGATAATGATCCTGATATCTTCCCTACGCGCCCTCCTGCTCCTGATTCCTATGCAACTTCAAGATACTATCGTCATGTTCGACATCCTTCATCCGAAGGTTTTGCTGAGATAATGATGCTTCAAGGAGGTCTGCTAATGGGAGGAATATTAGATTCACACGACCAATTCAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAACTGCTTGAACTTGAAGAGAAGATTGGTTGTGTGAACACTGGTCTTAAAGAAGACGAGATAGGATGCCACATAAGGAAAATCCAATATCCATTTTTGAGTGAAGCATTGAAACACCATATTAACAAAAAGTGCAGCATTTGTCAGGAAGAATATGAAGGAGATGATGAGGTGGGGAAGCTAAAATGTGAACACAGCTATCACTTCGAGTGCATCAGACAATGGCTTGCACAGAAAAACTTCTGCCCCGTCTGTAAGCAAGAAGTTGTGGTTCGTCACTAG 1131 0.4571 MSVVSNASATAEHIKCRKPRSHFGNLIQEADPNPAIPSIIEFTRCKSTISSLRLSNFSNNASNESIQGNGINIGASGSGNGRSKKKNNFSAAATFRGLGCTAGASQQVSVPAVIRSSADWQGKKARKKKHKRNSTKTCPGVLDGSGSANCVDFQDVWCGPGIGFSADAAASVDCVVARKNVSTRGKIDLERMTHRQRVSYLGRRTVNPETISFLDNDPDIFPTRPPAPDSYATSRYYRHVRHPSSEGFAEIMMLQGGLLMGGILDSHDQFRDWRLDVDNMSYEQLLELEEKIGCVNTGLKEDEIGCHIRKIQYPFLSEALKHHINKKCSICQEEYEGDDEVGKLKCEHSYHFECIRQWLAQKNFCPVCKQEVVVRH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1666 376 MobiDBLite consensus disorder prediction 119 138 - -
Lele06g1666 376 SUPERFAMILY RING/U-box 327 374 - -
Lele06g1666 376 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Lele06g1666 376 FunFam E3 ubiquitin-protein ligase rnf12-A 295 374 - -
Lele06g1666 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 374 IPR013083 -
Lele06g1666 376 Pfam Ring finger domain 327 369 IPR001841 -
Lele06g1666 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 68 372 IPR045191 GO:0061630
Lele06g1666 376 SMART ring_2 328 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1666 Lele-ChrLele06 11201916 11205485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1666 12 283 C3H Transcription Factor Family AT1G73760 39.865 7.85e-51 170