Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1620 ATGAAAGCGGCAAATGCATTGGGAGCTAAAACTGCTAGAGTTTGTGATAGCTGCCTTCGCCGACGAGCACGGTGGTTTTGCGCCGCCGATGACGCTTTCTTATGCCATGGCTGTGACAATCTGGTTCACTCTGCGAATCAGTTAGCCAGCAGACATGAAAGGGTTCGTCTTCAAACTGCTTCATCCTCCAAAAAGAGTACCTCCTCCTCCTCGTCGCAAGTATGGTACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCATAACAATAGCAAGCAGTTATCGTTATTGGCTCAAAAAAAATCCAAACATGAGGAAGAAGAGGAGGACGAAATTTTTAATAGTACTCTTCCCTTTGTGCCGGAGCTCGGAAGCGAAGAAGTAGGTGGTGGGCTGGACGAGAGCGACGAGCGGTTTCTTTGCCGGGTTCCGGAGTTTGATCCATTTGAAGATGAGCTTTGCAATATTTACAGTGAGGTTGGGGATGATCAGAGTTTGGTTGTAATGAAGAAAGATGATGATGATGATGATGATGATGTGAATGATGAAGGAATGTGTTGTGACTTAGACAATATTTCGGAGTTTCTTGCGTCGGATATGGATCTGGCAGAGTTTGCTGCTGATGTTGAAAGCTTACTGGAAAGTGGGCTTGATGAATCTGCAGGAGCGTCAGAATTACTGTTGGATTGTAAACAAGAAGAAATGATGGAAGCATTGGAGTATACTTTTGTAGGGTCGACGACAGACAAAAATGATAATGCGATGGTAAAGATTAAGGATGAAGAACAAGTAATTGAAGCTAACATGGTTGTAGGCATGACAAGCGAGACCTTAAATTGCAACACATCATCAGAAGAGGAAAAGAAGGTGGAAACGAAGATATTTTTGAGGTTAAACTACGAGGATGTCATAAGTGCTTGGGCAAGTCAAGGTTGTCCCTGGACAACAGGAAACCCACCTCAGTTCAACTCTAATGACTGCTGGCCACAGTGCTTGGGATCGAGTGGAGGAGATGTTCATCATCAGTGCTGTTATGGGGAAGTTGGTGAGGGCTTAAGGGGACATGGAGGTGGGGGAAGAGAAGCGAGAGTGTCGAGGTACAGAGAGAAGAGGAGAACGCGCTTATTTGCGAAGAAGATAAGGTACGAGGTGAGGAAACTAAACGCAGAAAAAAGACCCAGAATGAAAGGTCGATTTGTGAAGATCAGGACGTCGTCCTTCGTTGGAACCACTACTGCTTTGCCTGCTGCTTCTCACTGA 1260 0.4563 MKAANALGAKTARVCDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASSSKKSTSSSSSQVWYSGFTRKARTPRHNNSKQLSLLAQKKSKHEEEEEDEIFNSTLPFVPELGSEEVGGGLDESDERFLCRVPEFDPFEDELCNIYSEVGDDQSLVVMKKDDDDDDDDVNDEGMCCDLDNISEFLASDMDLAEFAADVESLLESGLDESAGASELLLDCKQEEMMEALEYTFVGSTTDKNDNAMVKIKDEEQVIEANMVVGMTSETLNCNTSSEEEKKVETKIFLRLNYEDVISAWASQGCPWTTGNPPQFNSNDCWPQCLGSSGGDVHHQCCYGEVGEGLRGHGGGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKIRTSSFVGTTTALPAASH 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1620 419 Pfam CCT motif 360 401 IPR010402 GO:0005515
Lele06g1620 419 SMART bboxneu5 10 57 IPR000315 GO:0008270
Lele06g1620 419 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515
Lele06g1620 419 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 3 402 - -
Lele06g1620 419 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Lele06g1620 419 MobiDBLite consensus disorder prediction 83 115 - -
Lele06g1620 419 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Lele06g1620 419 CDD Bbox1_BBX-like 14 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1620 Lele-ChrLele06 10848903 10850587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1620 4 401 C2C2-CO-like Transcription Factor Family AT1G25440 42.459 1.47e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele06g1620 zf-B_box 1.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1620 06 10848903 10850587 Lele06g1620 06 10848903 10850587 ECH
Lele06g1620 06 10848903 10850587 Lele07g1828 07 11621844 11624019 hybridization
Lele06g1620 06 10848903 10850587 Lele08g1612 08 10740689 10742344 hybridization