Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1570 ATGGAGCAGAACGACGTTGTCGCGCCGTTCGTCATAAAGACGTACCACATAGTCAACGATCCCAGGACCGATAATCTCGTCGCTTGGGGGCCGGCCAACAACAGCTTCATCGTCGTCGACCCTTTGGATTTCTCCCGCACCATCTTACCAGCGTATTTCAAGCACAAAAACTTCTCCAGCTTCGTTCGTCAGCTCAATACCTATGGTTTCAAAAAGGTGGATTCAGACCGATGGGAGTTTGCGAACGAGTGGTTCCTGCGCGGGCAGAAGCAGCTGCTGGTGAACATAGTGAGGAAGAAACAGAGCAAGAATAAGAATATTATGTTCTATCATGAAGGGTGGGAGGGGAAGCTGGAGGAAATGGATGAGGAAGTGTTGGTGACGGAGATAGCGAGGTTGAAGGAGGAGCAGAAGGCGTTGGACAAGGAGGTGGAAGGGATGAATAAGAGGTTGGAGGCGACGGAGAGACGACCTCAGAAAATGATGGCGTTTCTGTGCAAAGTGGTGGAGGAACCTGACGTTCTATCCCGTATATTGGCCCAGAGAGAAGGAAGACGACAGTTGCCGGAGAAGAGGCGGCGCTTTATATCATCAGCCACTGCTGCCAGCACCTCGTCCTCGTCTTCGTCTGGCATGGTTGGCAAACCAGAGGTGGAAGAAGACGACGCAACTGTAGGAGGTATCATGTCTTCGTCGCCGGAGACTTGTTTCGAAACTCATAATTTTGGTCAATCTTCACCGCCACAGGAATCACCGTATTGGTGGGGCCAAAGCCAGGCTACACTTGATACGCCTCCTCGGGGTCAACAGAGTAGTAGTGACACCGCCGCTCCCACGGCAGTGGGAACAGTGTGGCCGCCTCTAGGAGGGACGTATTCGGGATGCCACGCCGGTGACGGTCAATTGACTTATTTGACAGATATGGCGCCGGAGACTCAGAGCAAACCGCCGCCGCCTTATCCATTTTCACTGCTGGAGTGGGGCTTTTAG 990 0.5293 MEQNDVVAPFVIKTYHIVNDPRTDNLVAWGPANNSFIVVDPLDFSRTILPAYFKHKNFSSFVRQLNTYGFKKVDSDRWEFANEWFLRGQKQLLVNIVRKKQSKNKNIMFYHEGWEGKLEEMDEEVLVTEIARLKEEQKALDKEVEGMNKRLEATERRPQKMMAFLCKVVEEPDVLSRILAQREGRRQLPEKRRRFISSATAASTSSSSSSGMVGKPEVEEDDATVGGIMSSSPETCFETHNFGQSSPPQESPYWWGQSQATLDTPPRGQQSSSDTAAPTAVGTVWPPLGGTYSGCHAGDGQLTYLTDMAPETQSKPPPPYPFSLLEWGF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1570 329 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Lele06g1570 329 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1570 329 MobiDBLite consensus disorder prediction 186 220 - -
Lele06g1570 329 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1570 329 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1570 329 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1570 329 MobiDBLite consensus disorder prediction 239 279 - -
Lele06g1570 329 FunFam Heat stress transcription factor B-4 2 100 - -
Lele06g1570 329 Gene3D - 2 100 IPR036388 -
Lele06g1570 329 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1570 329 MobiDBLite consensus disorder prediction 239 280 - -
Lele06g1570 329 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 266 IPR027725 -
Lele06g1570 329 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1570 329 MobiDBLite consensus disorder prediction 197 213 - -
Lele06g1570 329 Coils Coil 123 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1570 Lele-ChrLele06 10405379 10406497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1570 6 203 HSF AT3G24520 57.711 5.99e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele06g1570 HSF_DNA-bind 5.4e-30 CL0123