Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1564 ATGTCAAGCACGCCTCCTCCCGGAGCTTCTCCTGCCCCCACATCGCCGCCAGCTACTAACACAACTTCTCCTCCTCCGCCCACTACTAACACAACCTCTCCACCACCCTCGGCCACCCCTACTGCACCACCTCCCGCTACTCCCTCCTCTCCACCACCGGCTACTCCTTCGCCTCCTCCGCCAGCCACGGCCTCTCCCAGCCCTCCGTCTCCATCCACACCTTCAACCTCGCCACCGCCGCCTACGTCTGGTACCAATTCTCCACCGCCTCCGGTGACTCGAAGCTCGCCTCCTCCTCCTCCTCCGTCCAGTTCATCCACGCCTTCAACTCCGACTCGAAGCCCGCCTCCACCGCCTTCGTCCCCTTCTTCGTCGCCAAATATACCAACTGGTGTTATTGTTGGAATCGCCGTTGGTGCTGTGGCGATTCTTGTAATTTTGAGCCTTGTATGCATATGTTGTCGGAGGAAGAGGAGGAGAACAAGTAATGCGGGATACTATGTCCCGCCACAGGGACCTAAAGGTGACCAATATGGTGGCCCACCACGTCAATGGCCGCATAATGCTCCCCCTCCTTCAGATAATGTTGTATCCGTGATGCAAAAGCCACCGCCACCGCCACCGCCACCAGGTGCATCACGACCATCCCAATCACCAGCTTATGACCCTAAACCTCCTCCGTCATCACTATTCCTGAGCAGCAGCGGTGGCTCAGGTTCCAACTATACAGGTGGCGAAAATCCACTCCCACCCCCTTCTCCTGGCATTGCATTGGGTTTCTCAAAGAGCACATTTACATATGAAGAGTTGGTACGGGCAACAGATGGGTTCTCCGATGCCAACCTCCTTGGACAAGGTGGATTTGGATATGTACACAAAGGAATCCTGCCGAACGGGAAGGAGGTGGCAATCAAGCAGCTAAAGGCAGGAAGTGGCCAGGGAGAACGAGAATTTCAAGCAGAAGTTGAGATCATTAGCCGAGTTCATCACAGACATCTTGTTTCTCTGGTTGGATACTGCATCACTGGACACCAGAGATTGCTTGTTTATGAATTTGTTCCAAACAATACGTTGGAACTTCACTTACATGGAAAAGGGCGACCTACTATGGATTGGCCCACAAGACTGAAAATTGCACTAGGATCAGCGAAAGGACTGGCGTATCTCCATGAGGATTGTCATCCTAAGATCATCCATCGTGATATCAAAGCTGCTAATATACTTCTGGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTAGCGAAGTTTTCTTCTGATGTCAATACTCATGTTTCCACTCGAGTGATGGGGACTTTTGGGTATCTGGCTCCAGAATATGCTTCCAGTGGGAAACTCACAGACAAATCAGATGTTTTCTCCTTCGGGGTCATGCTCCTGGAGCTAATTACTGGACGTCGACCGATTGACAAAACTCATACTTTCATGGAGGATAGTCTGGTAGACTGGGCAAGGCCTTTGCTTATCCGTGCTTTGGAAGAACATGATTTTGATTCTGTGGTTGATCCAAGGCTCAAAGATGAATATGACCCCAATGAAATGACTCGCATGGTTGCATGTGCTGCAGCCTGCACCCGTCATTCGGCACGTCATAGACCAAAAGTGAGCCAGGTTGTCCGTGCTCTGGAAGGAGATATGTCTCTATCAGATCTGAACGAAGGAATTAAACCTGGACACAGCTCTGCCTACAGTTTCCGAGGAAGCTCTGATTATGACACTGCACAATACAAGGAAGACATGAAAAAATTCAGGAAAATGGCTTTAGGAACCCATGAGCTTGGCGTTAGCAGTGAATACAGTGCACGTACAACTGACAACAGCTTACACCCATCTGGCTCAAGCAGCGAAGGCCGGAGCAGCGAGACCACCCAGGAAATGGAAATGAGAAAGATGAATAACCACCAAGCTCACAGTGGAAGCTCTTGA 1950 0.5067 MSSTPPPGASPAPTSPPATNTTSPPPPTTNTTSPPPSATPTAPPPATPSSPPPATPSPPPPATASPSPPSPSTPSTSPPPPTSGTNSPPPPVTRSSPPPPPPSSSSTPSTPTRSPPPPPSSPSSSPNIPTGVIVGIAVGAVAILVILSLVCICCRRKRRRTSNAGYYVPPQGPKGDQYGGPPRQWPHNAPPPSDNVVSVMQKPPPPPPPPGASRPSQSPAYDPKPPPSSLFLSSSGGSGSNYTGGENPLPPPSPGIALGFSKSTFTYEELVRATDGFSDANLLGQGGFGYVHKGILPNGKEVAIKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGHQRLLVYEFVPNNTLELHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPIDKTHTFMEDSLVDWARPLLIRALEEHDFDSVVDPRLKDEYDPNEMTRMVACAAACTRHSARHRPKVSQVVRALEGDMSLSDLNEGIKPGHSSAYSFRGSSDYDTAQYKEDMKKFRKMALGTHELGVSSEYSARTTDNSLHPSGSSSEGRSSETTQEMEMRKMNNHQAHSGSS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1564 649 PRINTS Proline rich extensin signature 41 53 - -
Lele06g1564 649 PRINTS Proline rich extensin signature 5 17 - -
Lele06g1564 649 PRINTS Proline rich extensin signature 53 74 - -
Lele06g1564 649 PRINTS Proline rich extensin signature 20 36 - -
Lele06g1564 649 Gene3D Transferase(Phosphotransferase) domain 1 353 561 - -
Lele06g1564 649 FunFam Proline-rich receptor-like protein kinase PERK1 353 561 - -
Lele06g1564 649 SUPERFAMILY Protein kinase-like (PK-like) 253 550 IPR011009 -
Lele06g1564 649 MobiDBLite consensus disorder prediction 197 226 - -
Lele06g1564 649 ProSiteProfiles Protein kinase domain profile. 277 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele06g1564 649 MobiDBLite consensus disorder prediction 228 246 - -
Lele06g1564 649 MobiDBLite consensus disorder prediction 163 257 - -
Lele06g1564 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Lele06g1564 649 FunFam proline-rich receptor-like protein kinase PERK1 255 352 - -
Lele06g1564 649 Pfam Protein tyrosine and serine/threonine kinase 282 550 IPR001245 GO:0004672|GO:0006468
Lele06g1564 649 MobiDBLite consensus disorder prediction 1 127 - -
Lele06g1564 649 ProSitePatterns Protein kinases ATP-binding region signature. 283 305 IPR017441 GO:0005524
Lele06g1564 649 SMART serkin_6 277 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele06g1564 649 MobiDBLite consensus disorder prediction 1 125 - -
Lele06g1564 649 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 139 615 - -
Lele06g1564 649 MobiDBLite consensus disorder prediction 605 629 - -
Lele06g1564 649 MobiDBLite consensus disorder prediction 605 649 - -
Lele06g1564 649 Gene3D Phosphorylase Kinase; domain 1 257 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1564 Lele-ChrLele06 10346308 10350231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1564 85 632 Trihelix Transcription Factor Family AT1G70460 49.635 2.21e-172 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lele06g1564 PK_Tyr_Ser-Thr 3.3e-46 CL0016