Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1549 ATGACCACCACCACCGCCACCACTTCTTCTCAGATCCTTCGACACACCACCGCCTTCCTCTCCCACGTCCTCTCGCATTCCGAACTCCGACGCCGCCTCATTTCTACCCTCCTTCGCGACTCTTCAATCCCTAACCAAATCACCCTCAAACACCTCAATCTCGCCGCCGACACTCTCAATAATGCTATCTCTGTCTCCAGCCCTTCCATCCGATCCTCCTCCCTCACACTCGCCGAGAAGCTCCTCCTCCCTCTCCCTCAGAATCCCGTCTCGTCTTTCCTTCTTTCTCTCATATACACGATCAACAAACGACAAGTCGAAGCCGCCATAATTATCCTTCTAGTCTTCTGTTTAAGCCCTTCATTGGCCCGATCGGAAATCGCCCCGTTTCTCTACGAGCAGCTGTTTTCTCTACACCTCCTCCCAGTTTTCCGATCCTTCGATGAACAGAGAGCAAAAATACTACCATCTACATCGGTAAATTCAGCACGCTATCCAGATGAGTATTCAATTTTTGATGAATCGGTTGTCTTACCCTACACGAAATTGTTGTCACGGATGAGCGACGACCAAGCCTCGAAGCTGAGGGAATTGGAGAGAGACTACGAAGAGGCTATTGATGACAATTGCAGGATTGTTGCCGAGTACTTCAAAGAAGTTTTGATGAATAATACCAGCGACACATCAATTAGTCCGCCATTGTCGGTTCAGAAGAACAGTCGAGAGCATAGTCAAGAGGAGATAGTGGAAACAGATATGCCTTTGTTTAAGAACGGACGGTATAATCCAATTTGGACTGAAAGGGATGTGTCTATTGAATTTTCGAGTAGCAGTTTCAGCGCAAAGTGTTTGAATGCACCGTTTTACCCTCAAAGGGTCTCTCCTAAAATCCCCAAAGACCAAGAATCTTCTAAAAAACTGTCCTTACCATCCCGTTCATACATAGACGCTGAAACTGATCATGAGTCTTCAGATGAAAATATGCCTTGTTATTCCTCAGAATCTGAGGCAGAAACTAAGAAATATTCATTTATCATAGTTTTGTTGTTTGCTGTGTTCTCTCAAACTTGGACTCTTCCTGTTCCTAGTTCCCCAGATTATACCATGGCAGATTATGATCACCAGCCGCCTGGAAATGGAAAATGTACGCCTCCCAAGGACTTTGTCTGTCCAATAACTAGCAATCTATTTGATGATCCAGTGACTCTTGAGACAGGACAGACATATGAAAGGAAAGCTATTGAAGAATGGTTCAACAGGGGAAACTCAACCTGTCCAATCACTCGCCAGGAGCTGCAAAATACCCAGCTGCCTAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACAGAATCCCAATTCAATCCCATCTCCATCTCCATCTGAGAGTCTACATGCTGAAACTGAGGTACCAATCAAGTCAACGATGCCTTCAACTTCTCCTAATAGTGTCATAACTCAAGCCAATGTTGATGGGATGATGGGTGAGTTAAGGCATGCAATTAACAACCTGTATATGTCAGAGATCCTCGAGGAGTCAGAAATGGCTGTGCTTCAAATTGAGCAATTTTGGAAAGAAGTAAACCTGGGAGTGGATATCCAGAGCATGTTATCAAAACCTCCGATCATTAATGGGTTCATGGAGATTCTATTTAATTCTGTTGATCCCCAGGTGCTTCAAGCAACAGTTTTTCTTCTGGCCGAGATGGGTTCTAGGGACAATGCTGTTATTCAGACGCTTACTCGAGTGGACTCTGATGTAGAATGTATTATGGCGCTTTTCAAGAATGGCTTGACAGAGGCAATTGTATTGATATATCTCCTGAAGCCTTCTACTACTGCTCTTACAGAAATGGCCATATTGGAGTCTCTCGTAACAGTTTTTGATAAGAAAGAGGAGGACTTGCTTAAGATGTGCATAAAGCCCAAGTCAGCGGCGGTACTTATACTGGCACAGATTCTTGGAAGCAATGAGGAGAGAATTGCATCTTCAGTAGCCAAGACTTTGATAAATGGTAGAGTAATTGAATGTATATTTGGCAGTTTTCGAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCATCCAGGAGGATGGAACTTGCAGGCATCTCATTGCTGAAAAAGTTGAGCTGTCTCCCATTTTGGAAAGCTTCATTGGGGCGAATGGTGTAGAACGTTTTAAGACAGTCCAATTTTGCTCTGAATTAGTCAAATTAAATAGAAGGACATTGAATAAACAAATCCTCCACATTATAAAGGAAGAAGGTGCTTTCAGTACAATGCACACTTTCCTCGCTTATATGCAGACATCCCTTCAAGATCAATGTCCAGTTGTGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTAGAACCAAGAAAGATGAGTATATACCGTGAAGAAGCTATAGATACTCTTATTTCGTGCCTCAGAAACAATGATTTCCCGGCTACCCAAGTAGTAGCTGCTGAGACAATAGTGTCATTGCAAGGGAGATTCCACTTCGCTGGAAAGCCTCTTATGAGAGAAGTCCTTCTCAATCGTGCTGGCTTTAACAGAAATCATAGAAGTCTTTATCAGATGGATAATATTAGCAATATCAGTGGAGAACTTGAAACGAATCCAGAAGAAGAGAAGGCAGCTGATGACTGGGAGAGAAAAATTGCGTCTGTTTTAGTTGGCCATGAGTTTGGTCTACTTTTTGAGGCTTTAGCTGAAGGCCTGAAAAGCCGAACTACACAACTAAGTTCAGCATGCTTTATATCAGCCACGTGGCTTACATACATGCTTACCATTCTACCAGATACAGGAATACGAGGAGCAGCCTGTGTCTGCTTGCTCAAGCGCTTTGTATCTATATTAAAATCTACTAAGGACACTGAAGATAGAATCCTTTCTATGCTTGCTTTAAATACCTTTCTCCAGTACCCTGATGGATTGGTTGATCTTACTTCCTACACTAAGGATGTCCTAAAAGGTTTGAGAGAGCTAAAGAGATTCTCCCCTCTGGCATCTGAAATGCTTAAAGTTCTTGTTGAAGAGAATGAATCTAAAGCTGGCATCTGGATGCATAAAGAATTAATTCAGGTAGATTGCAGTGAGAACGGAGAAGTGTTGCCTGTCACTTGTCATAAGGATAAAATATTTTCAGGCCATTCAGATGGAACTATCAAGGTCTGGGCAGTAAGGGGGAGCTTATTCCATCTGATTCAAGAGACGCAAGAACACATGAAGGCGATTTCAAGTTTGGTAATTTCAGAATCTGGTGACAGACTATACAGTGGTTCACTTGATCGATCTGTAAAGGTTTGGTCTATAGGAAAGTCAGCAATACAGTGTGTACAGGTGCATGATATGAAAGATCAGATTCATAATTTAGCTGTAGCCAATAGCAAATTCTGCTACATTCCTCATGGAAATGGTGTTAAGATTCAATCATTGAATGGAGAATCGAAGCTGTTAAACAGTAACAAATACGTCAGGTGCTTGGCTCTTGTTCATGAGAGACTATACTGCGGATGCCACGACAACAGTATTCAGGAGATAGATTTGGAAAGAGGAACAGTCAATTCCATTCAAAGCGGTTCTAAAAGATTGCTTGGTAAAGCAAATCCCGTTTATGCCATACAAATTCGTGGTGAACATATATATACAGCCAATTCTTCCTTGGATGGAGCTGTTATAAAGATATGGAACACCTCCAATTACAGTATGATTGGATCACTGGGAATTGCATCAGAAGTGAGGACGATGGCAATGAGCTCAGAATTAATTTACTTGGGTTGCAGGGGAGGAGCTGTGGAAATTTGGGATAGGAAGAAACAGAACAGAATTGATACATTACAGATTGGTACAAATGGTAAGATTGCTTGCATGGCTGTCGATGGAAATGAAGAAATTTTTGTCATTGGAACCTCTGATGGCCGAATTCAGGTACCCCTTTTCCCTTATAATTTTTTTTTTGCGTTCACTGTTTACAATTCTTTTCTTTCCTAG 4026 0.4232 MTTTTATTSSQILRHTTAFLSHVLSHSELRRRLISTLLRDSSIPNQITLKHLNLAADTLNNAISVSSPSIRSSSLTLAEKLLLPLPQNPVSSFLLSLIYTINKRQVEAAIIILLVFCLSPSLARSEIAPFLYEQLFSLHLLPVFRSFDEQRAKILPSTSVNSARYPDEYSIFDESVVLPYTKLLSRMSDDQASKLRELERDYEEAIDDNCRIVAEYFKEVLMNNTSDTSISPPLSVQKNSREHSQEEIVETDMPLFKNGRYNPIWTERDVSIEFSSSSFSAKCLNAPFYPQRVSPKIPKDQESSKKLSLPSRSYIDAETDHESSDENMPCYSSESEAETKKYSFIIVLLFAVFSQTWTLPVPSSPDYTMADYDHQPPGNGKCTPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQELQNTQLPKTNYVLKRLIASWKEQNPNSIPSPSPSESLHAETEVPIKSTMPSTSPNSVITQANVDGMMGELRHAINNLYMSEILEESEMAVLQIEQFWKEVNLGVDIQSMLSKPPIINGFMEILFNSVDPQVLQATVFLLAEMGSRDNAVIQTLTRVDSDVECIMALFKNGLTEAIVLIYLLKPSTTALTEMAILESLVTVFDKKEEDLLKMCIKPKSAAVLILAQILGSNEERIASSVAKTLINGRVIECIFGSFRAEWAEERIAAVEILLRCIQEDGTCRHLIAEKVELSPILESFIGANGVERFKTVQFCSELVKLNRRTLNKQILHIIKEEGAFSTMHTFLAYMQTSLQDQCPVVAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNNDFPATQVVAAETIVSLQGRFHFAGKPLMREVLLNRAGFNRNHRSLYQMDNISNISGELETNPEEEKAADDWERKIASVLVGHEFGLLFEALAEGLKSRTTQLSSACFISATWLTYMLTILPDTGIRGAACVCLLKRFVSILKSTKDTEDRILSMLALNTFLQYPDGLVDLTSYTKDVLKGLRELKRFSPLASEMLKVLVEENESKAGIWMHKELIQVDCSENGEVLPVTCHKDKIFSGHSDGTIKVWAVRGSLFHLIQETQEHMKAISSLVISESGDRLYSGSLDRSVKVWSIGKSAIQCVQVHDMKDQIHNLAVANSKFCYIPHGNGVKIQSLNGESKLLNSNKYVRCLALVHERLYCGCHDNSIQEIDLERGTVNSIQSGSKRLLGKANPVYAIQIRGEHIYTANSSLDGAVIKIWNTSNYSMIGSLGIASEVRTMAMSSELIYLGCRGGAVEIWDRKKQNRIDTLQIGTNGKIACMAVDGNEEIFVIGTSDGRIQVPLFPYNFFFAFTVYNSFLS 1341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1549 1341 Gene3D - 1166 1329 IPR015943 GO:0005515
Lele06g1549 1341 Gene3D - 1031 1165 IPR015943 GO:0005515
Lele06g1549 1341 SMART WD40_4 1245 1281 IPR001680 GO:0005515
Lele06g1549 1341 SMART WD40_4 1076 1115 IPR001680 GO:0005515
Lele06g1549 1341 SMART WD40_4 1150 1193 IPR001680 GO:0005515
Lele06g1549 1341 SMART WD40_4 1034 1071 IPR001680 GO:0005515
Lele06g1549 1341 SMART WD40_4 1284 1324 IPR001680 GO:0005515
Lele06g1549 1341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 461 IPR013083 -
Lele06g1549 1341 Pfam U-box domain 385 455 IPR003613 GO:0004842|GO:0016567
Lele06g1549 1341 ProSiteProfiles Trp-Asp (WD) repeats profile. 1083 1116 IPR001680 GO:0005515
Lele06g1549 1341 SUPERFAMILY WD40 repeat-like 1055 1322 IPR036322 GO:0005515
Lele06g1549 1341 ProSiteProfiles U-box domain profile. 383 458 IPR003613 GO:0004842|GO:0016567
Lele06g1549 1341 SUPERFAMILY RING/U-box 381 461 - -
Lele06g1549 1341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1083 1116 - -
Lele06g1549 1341 MobiDBLite consensus disorder prediction 294 331 - -
Lele06g1549 1341 Pfam WD domain, G-beta repeat 1082 1115 IPR001680 GO:0005515
Lele06g1549 1341 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1322 - -
Lele06g1549 1341 SMART Ubox_2 387 451 IPR003613 GO:0004842|GO:0016567
Lele06g1549 1341 Coils Coil 188 208 - -
Lele06g1549 1341 SUPERFAMILY ARM repeat 504 1025 IPR016024 -
Lele06g1549 1341 CDD RING-Ubox_PUB 388 430 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1549 Lele-ChrLele06 10238421 10247292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1549 384 464 U-box Gene Family AT1G67530 51.852 3.76e-18 88.6