Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1538 ATGAGCCACCAACTGGGTCTTCTTCGTCTTTCTCTTCTCTTTCTAATTTTCTTCCATGTTACAGCACAACAACAGATGAACGATAGTGCACCTTCAATCGACGGAATCGCCAATTTCCAACCAAGTTTAGCAGTTGTCATAGGAATCCTATGTCTTATGTTTTCACTCACATTCATTCTTCTCTTGTATGCCAAGTTCTGTCAACGCAGAGCTTCAGCTCACGTTGACCCTGAGAACCTCCCTGAACTTGTGAGATCAAGATCCAGAAGATTCTCAGGAATCGACAAGACTGTCATAGAATCTCTTCCCTTCTTCAGATTCTCTGCTCTCAAAGGTTCAAAAGAAGGCCTTGAATGTGCAGTTTGTTTGTCAAAGTTTGAAGATATCGAAATCCTCAGACTTCTTCCCAAATGCAAACATGCTTTCCACATCGATTGTATTGATCATTGGCTTGAGAGACACTCAAGTTGTCCACTTTGTAGACGAAAGGTAAGTTCTGATGATCCAACCATGCTTACTTATTCAAACAGTTTGAGGCTTCTAATAACAAACCAGTCAGAGAATAATGGTGAGGAACCCAACATAGAGATCTTTGTTCAGAGGGAAGAAAAACGCCATGGTTCTTCTAGATTCAGAATCGGAAGCAGCTTTAGGAAATCTGGAAAGGGTATCATTAAAGAAGAAGAATTGCCGATCCAAGAAGAAGAAACAGAGCATGATGGTTGTGGAAAATTGTATCACAAACAAAACCACAAGATTACCATAAGTGATGTGGTGTTCAAGCAGAGATGGAGCAACGTGAGCTCTTCGGACCTCATGTTTTTGAGTTCAGAGATGATTAGTTCTGGGCAAAGCAAAAGATTCGATCTTTCAGAACCAAATGGTGAGAAGATTCGAGCTTCAACATCAGGGGAAAATGGGCAGATCATCAACAACATAAAGGAGGAGATGGAGAGGAAGATATCGATAGAGACAAAGGTCGGTGCATTAAACTCTGTCTTAGATACTTCAGATTGTGCAGGAACTTCATCATCTTCAAGTCATACGTCAAAATATGTGAATCCGAGGGAGAAAAGATCGATGTCGGAAATCACTGGTGTGTCTAGATTTGGAGATTTGGGTATGAGAAGAGACAGAGTGTTGAGAGATTCTTCAATGATTGCGAGTGATGTTAAAGAGGAAAGAAGGAGACAGCTATGGCTTCCAATCGCCAGAAAAACTGTTCAATGGTTTGTGAATAGAGAAAGATCTCGCCCATTAAATGTATAG 1269 0.4082 MSHQLGLLRLSLLFLIFFHVTAQQQMNDSAPSIDGIANFQPSLAVVIGILCLMFSLTFILLLYAKFCQRRASAHVDPENLPELVRSRSRRFSGIDKTVIESLPFFRFSALKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLERHSSCPLCRRKVSSDDPTMLTYSNSLRLLITNQSENNGEEPNIEIFVQREEKRHGSSRFRIGSSFRKSGKGIIKEEELPIQEEETEHDGCGKLYHKQNHKITISDVVFKQRWSNVSSSDLMFLSSEMISSGQSKRFDLSEPNGEKIRASTSGENGQIINNIKEEMERKISIETKVGALNSVLDTSDCAGTSSSSSHTSKYVNPREKRSMSEITGVSRFGDLGMRRDRVLRDSSMIASDVKEERRRQLWLPIARKTVQWFVNRERSRPLNV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1538 422 FunFam RING-H2 finger protein ATL43 94 168 - -
Lele06g1538 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 169 IPR013083 -
Lele06g1538 422 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Lele06g1538 422 SUPERFAMILY RING/U-box 98 167 - -
Lele06g1538 422 MobiDBLite consensus disorder prediction 338 360 - -
Lele06g1538 422 CDD RING-H2_PA-TM-RING 118 161 - -
Lele06g1538 422 Pfam Ring finger domain 118 161 IPR001841 -
Lele06g1538 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 416 - -
Lele06g1538 422 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1538 Lele-ChrLele06 10114062 10115330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1538 7 422 C3H Transcription Factor Family AT4G28890 45.701 2.55e-104 314