Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1494 ATGAATGATAGCTAACGGTCCTCCCCTATGATGCTCGGAGAACCCCACCACGCGAATCCGACGGTTCGCATACCGTCGTGGTCGGTCGCCGATGATCCGATGCCGGAGATGTACTCTCCTTACTCCATGAGTGGCATGTCTGCCAACTCCGACGGCAATGCCAGCGGCGGCGATTACTCTCCGTACTACTTTCAAGAAGCACTGACGGCACTCCAGCGTTATCTGCCGTCGAACGACGCCGATTTTGACTCCGATTCCGAGATTCTTGGTCGAGAGTTGGACGCTCCGGTGGATGCCTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGAGGAGGTGCGCACGTGGCCGGTCACATGACTGGACTGAGTGTCCTTATGCTCATCCTGGCGAGAAGGCTCGACGTAGGGATCCGAGGAAGTATCACTATTCGGGAACTGCGTGCCCTGATTTCCGCAAAGGGAATTGCAAGAAGGGAGACGCATGCGAGTTTGCTCATGGCGTGTTTGAGTGCTGGCTTCATCCAGCCCGTTATCGTACACAGCCATGCAAGGACGGCACCAGTTGCCGCCGAAGGGTCTGTTTCTTTGCTCACACGCCGGAGCAACTCAGGGTCCTTCCTCAGCAGAGTCCGAGGAGCGCTAACTCGGTGGACTCCTATGATGGGTCTCCTCTCAGGCAAGCGATTGAGTCTTCTTGCGCAAAAACGCTTCCATTTATGTCGTCTCCGGGTTCTGTTTCCCCTCCTGCAACGCCTACGGCAGAATCTCCTCCTATGTCGCCGATGACAGAGTCTCTGAGCCGCTCTCTGGGTTCGAGCTCCATCAATGAGATGGTGGCTTCCCTGCGTAATTTACAGCTTGGAAAGGTAAAGTCACTACCCCCTTCTAGAAATGTTCCAATGGGCTCTCCCCGTTTTGGATCTCCACGTGGATCGGTGCTCCGTCCAGATTTCTGTAGCCTCCCGTCAACGCCTACCGAGGCACCGACTCGTTCTGGTGCCAGCTATTTCGACCTTTGGGATCAGAGTTGTGAGGAGGAGCCTGCCATGGAGAGGGTGGAATCTGGAAGGGGCATAAGGGCGAAGATGTTTGAAAAACTTAGCAAGGAGAACTCTCTGGATCGATCGGGTCCCTCCACATCAGCTGGAGCTCCGGATGTAGGTTGGATTTCAGAGTTGGTTAAGTGA 1194 0.5503 MNDSXRSSPMMLGEPHHANPTVRIPSWSVADDPMPEMYSPYSMSGMSANSDGNASGGDYSPYYFQEALTALQRYLPSNDADFDSDSEILGRELDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSANSVDSYDGSPLRQAIESSCAKTLPFMSSPGSVSPPATPTAESPPMSPMTESLSRSLGSSSINEMVASLRNLQLGKVKSLPPSRNVPMGSPRFGSPRGSVLRPDFCSLPSTPTEAPTRSGASYFDLWDQSCEEEPAMERVESGRGIRAKMFEKLSKENSLDRSGPSTSAGAPDVGWISELVK 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1494 397 MobiDBLite consensus disorder prediction 1 29 - -
Lele06g1494 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 169 IPR000571 GO:0046872
Lele06g1494 397 SMART c3hfinal6 179 202 IPR000571 GO:0046872
Lele06g1494 397 SMART c3hfinal6 144 170 IPR000571 GO:0046872
Lele06g1494 397 Gene3D - 145 208 - -
Lele06g1494 397 PANTHER UNKEMPT FAMILY MEMBER 60 397 IPR045234 -
Lele06g1494 397 MobiDBLite consensus disorder prediction 241 270 - -
Lele06g1494 397 MobiDBLite consensus disorder prediction 368 397 - -
Lele06g1494 397 ProSiteProfiles Zinc finger C3H1-type profile. 145 171 IPR000571 GO:0046872
Lele06g1494 397 FunFam Zinc finger CCCH domain-containing protein 66 102 170 - -
Lele06g1494 397 MobiDBLite consensus disorder prediction 293 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1494 Lele-ChrLele06 9760241 9762742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1494 94 302 C2H2 Transcription Factor Family AT5G12850 49.074 2.72e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele06g1494 zf-CCCH 4e-06 CL0537