Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1437 ATGGCCAAGAATAGATTCGTGTGCGAGATTTGCAACAAGGGGTTTCAGAGGGACCAGAACCTGCAGTTGCACAGAAGGGGACACAATCTGCCTTGGAAGCTGAGGCAGAGGCCGAGCACGGAGGTGAAGAAGAGGGTGTACGTGTGCCCTGAGCCCTCCTGCGTGCACCATAACCCAGCTCGAGCACTCGGAGACCTCACAGGGATCAAGAAGCATTACAGCAGAAAGCATGGCGAGAAGAAATGGAAGTGTGATAAGTGCTCCAAAAGATACGCCGTCCAATCTGACTGGAAGGCTCACCAGAAAACCTGCGGTACCAGAGAATATAAATGCGATTGTGGCACCATTTTCTCCAGGAGAGATAGCTTCATCACCCACAGGGCCTTTTGTGACGCGTTAACTGAAGAAAATAACAGAGTGAACCAAGGATTAAGCGGCGGCTTGCAATCCAACTTGCAAAATCAGGCGCCAGCTGATCTTATGCCCACTATGCCTCTCCCAACCTCCTCCGACTTCAACAACCCCCTCCGGTCCCTCTCTCAGGACCTCGGCCCAAGCCCTTTTAAGACCATGAGCATGGTTGGGCCCATGTTCTCCACAACATCCGGATCCCTCTTGGTTGGCCCAAAGCCCATCTCTCCCTCCTCCTCCTCCGCGCTCCAGCTCAGCTCCAACACTTCCTCTCCCACCTTCAGTTACCTCCCAGACGGCAAAATCATGGGCCCAATGATTTCTGGGTCAGCCCAAATGTCTGCAACGGCTTTGTTACAGAAAGCGGCCCAAATGGGTGCCACCGCAAGCAACGGCAGCATCAACTCTCCCATGAAGCAGAAGAACTTGGTCACTAGGATGGCTGGTCCTGATCATAATAACGTCTCTGCTTCCATTAATAAACCACCATTTTCTGCTTCTGAACCTTCCTCCTTCGATCACTTCCAACCTCATCGTGATCAATCCAACCTGGCAGGGATTAATTGTGGTGGAACACTCACCAATCAACTGTTTCAGAGAGTACCACAAGAAATTTCAGAACGGTTTGATGCTACTGGTGGTGCTGCTTCTGCTGCTACTGGATCCGCAATTTCTGGTATGGGTATGTTCAGCCAGATTTTCCTTGCAAGTGATCATCAGAACCCAGGAGGATTGATGATGAAAAACCATGTGGAACTAGACAATAGTACCACCAATTCAGGTTTGATAATGCATGGGAGAGATGTAGTAGAAAAGAATCCAATGGGGCCAAATATTGCAACGGTTCATGATTTCTTGGGTGTTGGGGGTTCGGCGAATTTTCATGAACAAGAGCAACAAAGGTTGGAGTTCGAAGCCATGAATCACCAGAGAGTATCAGTTATGAATCATCACTTTCAACACCATCTTCCTCATGGGGATTCACCTTTGGATAAACCCATTTGGGATGTTTGA 1425 0.4933 MAKNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRPSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLSGGLQSNLQNQAPADLMPTMPLPTSSDFNNPLRSLSQDLGPSPFKTMSMVGPMFSTTSGSLLVGPKPISPSSSSALQLSSNTSSPTFSYLPDGKIMGPMISGSAQMSATALLQKAAQMGATASNGSINSPMKQKNLVTRMAGPDHNNVSASINKPPFSASEPSSFDHFQPHRDQSNLAGINCGGTLTNQLFQRVPQEISERFDATGGAASAATGSAISGMGMFSQIFLASDHQNPGGLMMKNHVELDNSTTNSGLIMHGRDVVEKNPMGPNIATVHDFLGVGGSANFHEQEQQRLEFEAMNHQRVSVMNHHFQHHLPHGDSPLDKPIWDV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1437 474 FunFam Zinc finger protein MAGPIE 2 29 - -
Lele06g1437 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Lele06g1437 474 Gene3D Classic Zinc Finger 5 29 - -
Lele06g1437 474 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Lele06g1437 474 Gene3D Classic Zinc Finger 61 140 - -
Lele06g1437 474 SMART c2h2final6 47 77 IPR013087 -
Lele06g1437 474 SMART c2h2final6 6 28 IPR013087 -
Lele06g1437 474 SMART c2h2final6 82 102 IPR013087 -
Lele06g1437 474 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lele06g1437 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 446 IPR031140 -
Lele06g1437 474 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1437 Lele-ChrLele06 9361957 9363497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1437 1 139 IDZ Gene Family AT3G50700 86.331 5.82e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele06g1437 None None None