Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1422 ATGGGAAGGCCACCTTGCTGTGATAAATCCAATGTGAAAAGGGGCCTTTGGACTCCCGAGGAGGATGCTAAACTACTCGCTTATGTCTCCAATCATGGCACTGGCAATTGGACTCTTGTTCCTAAGAAAGCGGGGTTAAACAGATGTGGTAAGAGCTGTAGGCTTAGATGGACTAACTATCTAAGACCTGACCTCAAGCATCATAGCTTCACTCCCCAAGAGGAAGAACTTATTATTAACCTTCATCAAGCCATAGGAAGCAGGTGGTCTTTGATTGCAAGGAGACTTCCTGGGAGAACGGACAATGATGTGAAGAACCACTGGAACACAAAACTGAGGAAGAAGCTTATGAAAATGGGAATTGACCCAGTGACCCATAAGCCTGTGTCTCAAGTCCTTTCTGATTTGGGAACTATTAGTTGCCTTTCAACTGTAACAACTGAAACACAAGTTCCAAACAGCAACGTAATGGTCTCTAATAAACTAGATCAAGAGGTGCAATCCCAATTCACTATTAACCCAGCTGAGAATAACGTCCACTCACACCATAATAATAACGAAGCTGCGTCTTCATGTTCATCACCGTCGTCGTCTTCTTCCTCTAATATCACACAACTTGTAAGCTCACCTCAGGTCATTACAACTACTGATGCAGTTGTTCCCGCTCCTCCTTGTTCATCGTTTAATTGGAGAGAGTTTCTTCTGAGTGACCCGCTCGTGTGCAACGAGCTGCAACAGCTGAACCAGTATGACGTCGTGCATGAGGTTTTGTCGTCGTCGTCTTCGTCGTTGAGTCACTCAGTTATGATGCAGAACCAAATACAAGTTTCGAATAATAATGCAAGTGATGAGGACTTGGGGCTTGTGGCTTATGAGGAAAGCATGAAGAAGCGCCAAGTTTGTGATGAGCAATATTGTGAAGGCACTTCATGTTCTTCGAGGGACGACGACTCATTCGTGGACGCTATTTTGAACAGGGATAGTGAGATTAGGGCAGCTTTTCCTCTACTCCTAGACGGTTCCACTGATTACTAG 1035 0.4473 MGRPPCCDKSNVKRGLWTPEEDAKLLAYVSNHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHHSFTPQEEELIINLHQAIGSRWSLIARRLPGRTDNDVKNHWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGTISCLSTVTTETQVPNSNVMVSNKLDQEVQSQFTINPAENNVHSHHNNNEAASSCSSPSSSSSSNITQLVSSPQVITTTDAVVPAPPCSSFNWREFLLSDPLVCNELQQLNQYDVVHEVLSSSSSSLSHSVMMQNQIQVSNNNASDEDLGLVAYEESMKKRQVCDEQYCEGTSCSSRDDDSFVDAILNRDSEIRAAFPLLLDGSTDY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1422 344 SMART sant 13 63 IPR001005 -
Lele06g1422 344 SMART sant 66 114 IPR001005 -
Lele06g1422 344 Gene3D - 7 67 - -
Lele06g1422 344 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele06g1422 344 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Lele06g1422 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele06g1422 344 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele06g1422 344 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele06g1422 344 FunFam transcription factor MYB80 69 129 - -
Lele06g1422 344 CDD SANT 17 61 IPR001005 -
Lele06g1422 344 FunFam Transcription factor RAX3 7 67 - -
Lele06g1422 344 PANTHER F14D16.11-RELATED 1 343 - -
Lele06g1422 344 Gene3D - 68 131 - -
Lele06g1422 344 MobiDBLite consensus disorder prediction 176 205 - -
Lele06g1422 344 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele06g1422 344 CDD SANT 69 112 IPR001005 -
Lele06g1422 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1422 Lele-ChrLele06 9235646 9236870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1422 1 339 MYB Transcription Factor Family AT3G28470 44.944 1.43e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele06g1422 Myb_DNA-binding 2.7e-16 CL0123