Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1410 ATGGAGCTGTACGGTCGGAACCCGGCTAGGAATGGGTCGCAACCGGGTAATCAATCTGAATGGCACCCATCAGGCGGCGAAACTGGGCTTGAAGAATCGATGTGGCACTTAACCGTCGGTGGCAGCGAGTCTTACCCGGAGCGTCCCGGCGTACCCAATTGTGTTTATTACATGCGAACCGGGTTCTGTGGATACGATAGCAGGTGCCGCTACAATCATCCTCGTGATCGTGCCGCGGTTGCGGCAGCTGTGAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTAAAAACTGGAACCTGCAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACACGGAGGTGGATCATTAAATCAAGCTCCACTAAATATTTATGGATACCCATTACGTCCGGGTGAGAAAGAATGCTCCTACTATTTGAAGACGGGGCTGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTAATCCAGCTGGCACATCCATGCCAGCATCTGCACCGCAGTTTTATCAACAGGTGCAGTCTCCTACGGTCCCTCTAGCTGAACAGTATGGGGGGGCATCCAACAGTTTGAGAGTGGCTAGGCCTTCACTATTGCCTGGTTCATATGTGCAGGGTGCTTATGGTCCTGTCCTTGTTTCTCCTGGGGTTGTTCCCTTTACAGGATGGAGTCCGTACACGGCACCTGTGAGTCCTGTGTTATCTCCTGACGCTCAATCTGCTGTTGGGGCTAATTCCCTGTATGGAGTGACCCGGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCTCTTCCATCTACTACTGGCCTTTCAGGCAAGGAACCAATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGCAAATATGGATTAGCGTGTCGATATCATCATCCCAGGGACCAGACCATGAACCGGCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGGGGGTGCAACCTTGTGTTTTTTACTTACAAAACGGGCATTGCAAGTTTGGCTCCACTTGCAAATTTGACCATCCTTTGGTGTCTGTGAGATACAGTCCGTCAGCATCCTCTCTCACTGATATGCCAGTAACTCCATACCCTGTCGGATCCTTGCTGTCTACCCTGGCACCGTCAACATCTTCAGAGCTTCGGCCTGAACTGATGTCAGGCTCAGAAGTGGAATCTTTTTCTACTAGAATGCCATCCTCTGGAAATGGTTCAAGCAATTCTGTCAGTTTAATTTTCTCACAAAGTGGAACTGTCTCTCTTTCTGATGTGCAACTCTCAAGTCAAAGCCCTACTCCTTTAAGCAGTAGCAGAAGCACCAGACAAAGTGGCGGTGACATACGATGA 1407 0.489 MELYGRNPARNGSQPGNQSEWHPSGGETGLEESMWHLTVGGSESYPERPGVPNCVYYMRTGFCGYDSRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLNQAPLNIYGYPLRPGEKECSYYLKTGLCKFGITCKFHHPNPAGTSMPASAPQFYQQVQSPTVPLAEQYGGASNSLRVARPSLLPGSYVQGAYGPVLVSPGVVPFTGWSPYTAPVSPVLSPDAQSAVGANSLYGVTRLSSSTSAFARPYTPLPSTTGLSGKEPIFPERPGEPECQYYLRTGDCKYGLACRYHHPRDQTMNRPLLSPIGLPLRPGVQPCVFYLQNGHCKFGSTCKFDHPLVSVRYSPSASSLTDMPVTPYPVGSLLSTLAPSTSSELRPELMSGSEVESFSTRMPSSGNGSSNSVSLIFSQSGTVSLSDVQLSSQSPTPLSSSRSTRQSGGDIR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1410 468 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Lele06g1410 468 SUPERFAMILY CCCH zinc finger 297 322 IPR036855 GO:0046872
Lele06g1410 468 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Lele06g1410 468 MobiDBLite consensus disorder prediction 395 429 - -
Lele06g1410 468 MobiDBLite consensus disorder prediction 1 28 - -
Lele06g1410 468 SUPERFAMILY CCCH zinc finger 339 364 IPR036855 GO:0046872
Lele06g1410 468 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Lele06g1410 468 Gene3D - 292 375 - -
Lele06g1410 468 Gene3D - 92 177 - -
Lele06g1410 468 Gene3D - 42 89 - -
Lele06g1410 468 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Lele06g1410 468 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Lele06g1410 468 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Lele06g1410 468 SMART c3hfinal6 293 320 IPR000571 GO:0046872
Lele06g1410 468 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Lele06g1410 468 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Lele06g1410 468 MobiDBLite consensus disorder prediction 10 24 - -
Lele06g1410 468 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872
Lele06g1410 468 MobiDBLite consensus disorder prediction 443 468 - -
Lele06g1410 468 PANTHER PROTEIN PHOSPHATASE RELATED 21 385 - -
Lele06g1410 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Lele06g1410 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Lele06g1410 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 363 IPR000571 GO:0046872
Lele06g1410 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 295 320 IPR000571 GO:0046872
Lele06g1410 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Lele06g1410 468 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Lele06g1410 468 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
Lele06g1410 468 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1410 Lele-ChrLele06 9091063 9096085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1410 1 416 C2H2 Transcription Factor Family AT5G18550 52.294 3.51e-140 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele06g1410 zf-CCCH 5.2e-08 CL0537