Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1341 ATGGATCAGCCTCCATCCTCTGCTGTTAGACGCAGCTTGAAGCGCAAGCTCGAACAAGAATTCACGGACGAAGGAGCAGATCCACCAACGGTCGATCGTAAAGTGTTGGTTCTTGATCCTCAATACTCTCGTCACGATCTTTTGAGTGAAGTTGTGTCACAAGTCACTATTCTCAACTCCAGTGTCTCATCGTCTCAGTCGGATCGCCTCGCGGCCAAGCGCGCTGCTCAGGTTCTCTGTGAACTCGCAAAGAACGAGGAAATTGTGGATAGTATAGTGGACAGCGGAGCCGTTCCTGCTCTGTTAAGGCATCTGAAAGCACCTGAACCAGTTAGAGAAGGTGATGGTGTTTCCAAGCCTTACGAGCATGAGGTGGAAAAGGGATGTGCCTACGTCCTTGGGCTTCTTGCTGTTAAACCAGAGCATCAACAACTCATTGTCGATGCCGGAGCTTTGCCCTGTCTTATGGATTTGGTAAAGAGGCACAAGTCCTGTGGCAATGGCCATTCACGTGCAATTACTGGCCTTATAAAGAGAGCAGCTGATGCCATCACAAACCTTGCTCACGAAAATAGCAGCATTAAAACCCGTGTTAGGATGGAAGGTGGTATCCCTCCTCTCGTTGAATTGCTTAAATTTGATGATGCAAAGGTGCAAAGGGCAGCTGCAGGGGCCTTACGAACCCTTGCATTTAAAAATGACGAGAACAAAAACCAGATTGTTGGATGCAACGCACTGCCTACTCTTGTACTAATGCTTGGATCAGAGGATGCTGCAATACATTCTGAAGCAGTTGGCGTGATTGGAAATCTGGTCCACTCTTCTCCAAACATAAAGAGGGAAGTTCTTCTTGCTGGTGCTCTACAACCTGTAATTGGATTACTTAGATCTTGCTGTTCGGAGAGTCAAAGAGAAGCAGCTCTTTTAATTGGTCAATTCGCTGCGACAGATTCTGATTGCAAGGTTCATATTGCTCAAAGAGGAGCTATCCAGCCACTGATTGACATGCTTAAGTCTCCAGATGCACAGCTTCGGGAAATGTCCGCTTTTGCTCTTGGGAGACTGGCTCAGGACACACACAATCAAGCTGGTATTGCTCATAATGGAGGTATAGAGCCTCTACTCAACCTTCTTTGCTCCAAGAATGGACCTCTCCAACATAATGCGGCCTTTGCTCTATATGGTCTTGCGGATAATGAGGACAATGTTGCGGATATTGTTAAGGTTGGTGGTGTTCAGAAACTACAGGATGGAGATTTCAAAGTTCAACCTACTAAAGAGTGTGTAGGAAAGACAATGAAAAGATTAGAGGAGAAAATGCAAGGACGAGTGTTGGAACAACTGTTGTATCTTTTGCGTTTTGCAGAAAAGGCTGTTCAAAGTCGCGTGGCTCTGGCTCTTGCTCATTTATGTTCTGCTGATGATCGGAAATTTATTTTTGTTGACTGCAACGGACTTGAGTTCCTGTTGGATCTTCTAGAATCTACAAACCTCAAACAGAAACGTGATGCTTCAATGGCACTTCACTCGTTGGCTGTCAGAACCACATCTGTCTCTCCCTTCGATGCTGATCCTCCATCCCCTACTCCCCAGGTATACTTAGGCGAGCAATATGTAAACAATCCTACACTTTCTGATGTCACGTTTTTAGTTGAAGGCAAACGGTTCTATGCTCACCGAATTTGTTTACTTGCTTCCTCTGATGCATTTCGAGCAATGTTTGATGGTGGTTACCGGGAAAGGGAAGCTAAAGATGTTGAGATTCCTAACATAAAATGGGTTGTCTTTGAGTTGATGATGAGATTTATTTACACAGGAACCGTAGATGTCAATTTGGATATTGCTCAGGATCTCTTAAGAGCTGCCGATCAGTATCTTCTGGATGGTCTTAAGCGGCACTGTGAATGTGCAATTTCTCAGGATGTTTCCGTGGAAAATGTTTCTCTTATGTACGAGTTATCGGAGGCATTTAACGCCTCGTCATTGAGACAAGCATGTATGCTATTTTTGTTGGACCAATTTGACAAACTGAGCACCAAACCCTGGTATAGCCGCATGATGCGTCGTATCATCCCAGATATACGTGAATATGTCAGAAATTTACTTGCCAAGTCCATATAA 2121 0.4479 MDQPPSSAVRRSLKRKLEQEFTDEGADPPTVDRKVLVLDPQYSRHDLLSEVVSQVTILNSSVSSSQSDRLAAKRAAQVLCELAKNEEIVDSIVDSGAVPALLRHLKAPEPVREGDGVSKPYEHEVEKGCAYVLGLLAVKPEHQQLIVDAGALPCLMDLVKRHKSCGNGHSRAITGLIKRAADAITNLAHENSSIKTRVRMEGGIPPLVELLKFDDAKVQRAAAGALRTLAFKNDENKNQIVGCNALPTLVLMLGSEDAAIHSEAVGVIGNLVHSSPNIKREVLLAGALQPVIGLLRSCCSESQREAALLIGQFAATDSDCKVHIAQRGAIQPLIDMLKSPDAQLREMSAFALGRLAQDTHNQAGIAHNGGIEPLLNLLCSKNGPLQHNAAFALYGLADNEDNVADIVKVGGVQKLQDGDFKVQPTKECVGKTMKRLEEKMQGRVLEQLLYLLRFAEKAVQSRVALALAHLCSADDRKFIFVDCNGLEFLLDLLESTNLKQKRDASMALHSLAVRTTSVSPFDADPPSPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREREAKDVEIPNIKWVVFELMMRFIYTGTVDVNLDIAQDLLRAADQYLLDGLKRHCECAISQDVSVENVSLMYELSEAFNASSLRQACMLFLLDQFDKLSTKPWYSRMMRRIIPDIREYVRNLLAKSI 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1341 706 MobiDBLite consensus disorder prediction 1 30 - -
Lele06g1341 706 Gene3D - 426 519 IPR011989 -
Lele06g1341 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 411 IPR000225 GO:0005515
Lele06g1341 706 SMART arm_5 358 398 IPR000225 GO:0005515
Lele06g1341 706 SMART arm_5 317 357 IPR000225 GO:0005515
Lele06g1341 706 SMART arm_5 191 231 IPR000225 GO:0005515
Lele06g1341 706 SMART arm_5 85 138 IPR000225 GO:0005515
Lele06g1341 706 SMART arm_5 473 513 IPR000225 GO:0005515
Lele06g1341 706 SMART arm_5 275 315 IPR000225 GO:0005515
Lele06g1341 706 SMART arm_5 139 189 IPR000225 GO:0005515
Lele06g1341 706 SMART arm_5 233 273 IPR000225 GO:0005515
Lele06g1341 706 SUPERFAMILY POZ domain 536 638 IPR011333 -
Lele06g1341 706 SUPERFAMILY ARM repeat 68 415 IPR016024 -
Lele06g1341 706 Pfam Armadillo/beta-catenin-like repeat 198 230 IPR000225 GO:0005515
Lele06g1341 706 Pfam Armadillo/beta-catenin-like repeat 317 356 IPR000225 GO:0005515
Lele06g1341 706 Pfam Armadillo/beta-catenin-like repeat 233 272 IPR000225 GO:0005515
Lele06g1341 706 MobiDBLite consensus disorder prediction 9 30 - -
Lele06g1341 706 Gene3D - 278 423 IPR011989 -
Lele06g1341 706 SMART BTB_4 545 642 IPR000210 GO:0005515
Lele06g1341 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 370 IPR000225 GO:0005515
Lele06g1341 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 705 IPR044282 -
Lele06g1341 706 Gene3D - 173 277 IPR011989 -
Lele06g1341 706 Gene3D Potassium Channel Kv1.1; Chain A 527 671 IPR011333 -
Lele06g1341 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 202 237 IPR000225 GO:0005515
Lele06g1341 706 Gene3D - 48 172 IPR011989 -
Lele06g1341 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Lele06g1341 706 SUPERFAMILY ARM repeat 365 513 IPR016024 -
Lele06g1341 706 Pfam BTB/POZ domain 538 640 IPR000210 GO:0005515
Lele06g1341 706 ProSiteProfiles BTB domain profile. 545 612 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1341 Lele-ChrLele06 8581858 8586954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1341 191 412 U-box Gene Family AT5G67340 28.700 4.76e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele06g1341 BTB 1.2e-25 CL0033