LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g1312	ATGGAGCAGTATGAAATTTTGGAACAGATTGGCAAAGGTTCCTTTGGTTCTGCTCTGCTTGTGAAACACAAGCATGAAAGGAAAAAGTATGTCCTCAAGAAGATCCGCCTTGCCCGTCAAACTGATAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATCTCTAGAGTACGAAATCCATTTATAGTTGAATATAAAGATTCCTGGGTAGAAAAGGGTTGTTTCGTATGCATTGTCATAGGTTATTGTGAAGGTGGAGACATGGCAGAAGCTATTAAAAAGGCTAGTGGTGTTCATTTTCCGGAAGAGAAACTTTGTAAATGGCTTGTTCAACTCTTGATGGCTCTTGATTACTTGCATGCAAACCATATCCTTCATCGTGATGTCAAGTGTTCTAATATATTCTTGACAAAAGATCAAGACATACGACTAGGTGATTTTGGTCTGGCTAAATTATTGACATCTGATGATCTTGCTTCCTCTGTTGTCGGGACTCCGAGTTACATGTGTCCTGAGCTTCTTGCTGATATACCCTATGGTTCAAAGTCAGATATCTGGTCTTTGGGCTGCTGTGTATATGAAATGTCTGCCCACAAGCCAGCTTTTAAAGCTTTTGATATGCAAGCATTAATTAACAAAATAAACAAGTCAATTGTGGCTCCTCTGCCAACCATGTATTCTGGCGCTTTTCGAGGGCTTGTCAAAAGTATGCTACGGAAAAATCCAGAGCTTAGACCAAGTGCTTCAGAGTTGCTAAACCATCCGCATCTTCAGCCCTACATTCTTAAAATTCACCTAAAATTAAACAGCCCCAGAAGTACTTTTCCATTCCAGTGGCCTGAGTCAAACTACGCAAGGAGAACTCGGTTTGTGGAGCCAGACTCTGTTTCTACCCTTTCTGATAGAGATAAACGATTGTCATTTAGCAATGACAGGGCCTTGAATCCCAGTATTTCTGGAACTGAAAAAGATTCTCAGTGTTCTACTCAAAATGGCCATGGATTTTCCACTCGTTCAAGGGACAAACTCTATGAACTATCTGTTGGTTGCGTCCGTGAAGAACGCATAGCTAACAAGTCAAAAGCCACCAAGTTCTCAACTGATGGCAGTAATACTCCAAGATTGAGAACAGCTAAGGATTCTTTCACCCCCAGAAGGCAGACTACCCCATCAAAAATATTTCATGCTGGTTCAAAGCGGGATTCACTTCCGGTGACTCGTACTCCAGCAGGAAATTCTTCTCCACCATCACGCAGGGCATCCCTTCCGCTGCCTACGAGAGTCATGACCACAGAAACCTCTTATAGAGACAAAGTGGGCCTCCTCCGGAGTGTGGAGTCTCCAGATGTTTCTGTTAATGCTCCACGAATTGACAAGATTGCTGAATTCCCTCTTGCATCTTCTGATGAAGCTATCTTCGCTGTCCCCAGAAGGTCATCAACATCTGCCATGCGCTCTTCTAGTTCACCAATTGGTGCTGTTTGCTCAATCACGAAGGATAAGTGTACTGTCCAGGTTGTGGACAAAGCCGTGGCTGCCCCTGCCAGAGTGAGTGATACGTATCCTCAATCTTCAGGTCCAGGATATGGAAGTGAATGCTCTGAGCATGTTACGGCTGATGTTTCAAGTCGTTCATCTGCAGAGTCACAACAGCGTCGGTTTGACACCTCGTCTTACCAGCAACGTGCCGAGGCATTGGAGGGGTTGCTTGAGTTCAGTGCAAGACTCCTACAACAACAGAGGTTTGAAGAACTTGGAGTGTTGTTGAAGCCATTTGGACCTGAGAAGGTTTCTCCAAGAGAAACAGCTATTTGGTTGACGAAGAGTTTTAAAGAAACCGTTGTCTAA	1851	0.4408	MEQYEILEQIGKGSFGSALLVKHKHERKKYVLKKIRLARQTDRTRRSAHQEMELISRVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKASGVHFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKLLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMSAHKPAFKAFDMQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPSASELLNHPHLQPYILKIHLKLNSPRSTFPFQWPESNYARRTRFVEPDSVSTLSDRDKRLSFSNDRALNPSISGTEKDSQCSTQNGHGFSTRSRDKLYELSVGCVREERIANKSKATKFSTDGSNTPRLRTAKDSFTPRRQTTPSKIFHAGSKRDSLPVTRTPAGNSSPPSRRASLPLPTRVMTTETSYRDKVGLLRSVESPDVSVNAPRIDKIAEFPLASSDEAIFAVPRRSSTSAMRSSSSPIGAVCSITKDKCTVQVVDKAVAAPARVSDTYPQSSGPGYGSECSEHVTADVSSRSSAESQQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g1312	616	MobiDBLite	consensus disorder prediction	311	338	-	-
	Lele06g1312	616	Pfam	Protein kinase domain	4	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele06g1312	616	CDD	STKc_Nek	3	258	-	-
	Lele06g1312	616	SMART	serkin_6	4	258	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele06g1312	616	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Lele06g1312	616	SUPERFAMILY	Protein kinase-like (PK-like)	1	310	IPR011009	-
	Lele06g1312	616	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	1	572	-	-
	Lele06g1312	616	Gene3D	Phosphorylase Kinase; domain 1	1	83	-	-
	Lele06g1312	616	FunFam	Serine/threonine-protein kinase Nek3	86	331	-	-
	Lele06g1312	616	MobiDBLite	consensus disorder prediction	361	423	-	-
	Lele06g1312	616	MobiDBLite	consensus disorder prediction	311	339	-	-
	Lele06g1312	616	MobiDBLite	consensus disorder prediction	519	557	-	-
	Lele06g1312	616	FunFam	Serine/threonine-protein kinase Nek2	1	83	-	-
	Lele06g1312	616	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	125	137	IPR008271	GO:0004672\|GO:0006468
	Lele06g1312	616	Gene3D	Transferase(Phosphotransferase) domain 1	84	270	-	-
	Lele06g1312	616	MobiDBLite	consensus disorder prediction	363	396	-	-
	Lele06g1312	616	ProSiteProfiles	Protein kinase domain profile.	4	258	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele06g1312	616	MobiDBLite	consensus disorder prediction	406	423	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g1312	Lele-ChrLele06	8401124	8405766	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g1312	10	288	MAP Kinase Kinase Kinase	AT1G53570	29.097	1.90e-37	144

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Lele06g1312		Pkinase	5.8e-64	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele06g1312	06	8401124	8405766	Lele06g1312	06	8401124	8405766	ECH
	Lele06g1312	06	8401124	8405766	Lele07g1519	07	9336292	9344942	hybridization
	Lele06g1312	06	8401124	8405766	Lele08g1307	08	8347585	8352161	hybridization