Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1304 ATGAATTATCTGTACACAGTAAAAGAAGAGTACTTGGAACCACCTTCATCTGAAGTAGGAGGTGAGCCAGAAATGGTTCTACCTCCCCAGCCAATACAGGGACTTCATGAAACAGGACCGCCTCCATTCCTCACCAAGACATTTGATATGGTGGACGACCCTTCCACTGATCACATAGTCTCGTGGAGCAGAGGTGGATCAAGTTTTTTTGTTTGGGATCCATGTTCTTTCTCTACCAATCTCCTTCCTAGATTCTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAATTGAACACTTACGGTTTTAGAAAAATTGATTCAGACAGATGGGAGTTTTCAAACGGAGAATTCATCAGAGGACACAAGCATCTACTGAGGAACATACGAAGAAGGAGAGCACCTTCTCCGGTTACTTCCCAAGTACCAGGTCAATGTGTTGAAGTTGGCGGGTTTGGAGTAGAAGAAGAAATTCTACGTTTAAGGCGTGACAAGCAAGTGTTAATGATGGAGCTTGTGAAGCTTAGGCAGCAGCAACAGAACACCAGAGCCTACCTTCTGGTGATGGAACAGAGGTTACAAGTAACAGAAATGAAGCAGCAACAAATGATAGCTTTCTTAGCTAGAGCGTTGAAAAATCCAGCTTTTCTCCACCAACTAATCCAACAGAGTAAGATAAAGGAACTGGAAGAAGCCATGACTAGAAAAAGAAGAAGGTCAATTGAGCAAGGACCGCTTGATGTTGCAGAATCAAGCAGTGAAAGTGAGGGAAGGAATAATCCTGTTAAAGTTGAAGTGTCTGAGCTTGAAGTTCTAGCTATGGAAATGCAAGGTCTTGGTCGGGGTAAGAGAGAACAGGAAGCACTTGAATCGCCAGAGAGGCTAGACAGCGAACTTGATGAAGGATTCTGGGAAGAGCTTTTTAGTGAAAATGTTGTGGGTGAACTAGATATTCCAAGCGATGAAGGTGAAGGTGAAGGCGAAGATGAAGATGTAGATATCAACGTCTTGGCCAGGCGCTTAGGTTACATTGGTTCAAGTATCTCGAAGCCGCTGCTGCTTCGGCAAGAACCTGTGGTAGCGTTAGCTGTCATTTTTAATCTCAAGAAGCCGTGGTATATTGGACAAGAAGTAGCTGAAGGACTGCAAGAACCATCAGTTAATGAGAATAGCTTTTGA 1179 0.436 MNYLYTVKEEYLEPPSSEVGGEPEMVLPPQPIQGLHETGPPPFLTKTFDMVDDPSTDHIVSWSRGGSSFFVWDPCSFSTNLLPRFFKHNNFSSFVRQLNTYGFRKIDSDRWEFSNGEFIRGHKHLLRNIRRRRAPSPVTSQVPGQCVEVGGFGVEEEILRLRRDKQVLMMELVKLRQQQQNTRAYLLVMEQRLQVTEMKQQQMIAFLARALKNPAFLHQLIQQSKIKELEEAMTRKRRRSIEQGPLDVAESSSESEGRNNPVKVEVSELEVLAMEMQGLGRGKREQEALESPERLDSELDEGFWEELFSENVVGELDIPSDEGEGEGEDEDVDINVLARRLGYIGSSISKPLLLRQEPVVALAVIFNLKKPWYIGQEVAEGLQEPSVNENSF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1304 392 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1304 392 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1304 392 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1304 392 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1304 392 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1304 392 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 258 IPR027725 -
Lele06g1304 392 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele06g1304 392 Coils Coil 158 178 - -
Lele06g1304 392 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Lele06g1304 392 MobiDBLite consensus disorder prediction 246 260 - -
Lele06g1304 392 FunFam Heat shock transcription factor 1 36 133 - -
Lele06g1304 392 MobiDBLite consensus disorder prediction 236 261 - -
Lele06g1304 392 Gene3D - 35 133 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1304 Lele-ChrLele06 8352595 8354129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1304 22 347 HSF AT3G22830 47.721 4.82e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele06g1304 HSF_DNA-bind 2.3e-31 CL0123