Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1295 ATGAATGGAACTGAAAGTTGGCCGCTTCAGGAAGATGTGGAGCCAATCAAACCTTATCCTGAAGCTATTAGCATCTGTCCTGTCCATCCCCATCTGGCATTTGGCGTGCTCTTGCCATTCACTCCCCAGCCACTCTTCTCCCTCCTTTGGCTTTTTGGCTCTCACACTCTCAAGGAAATGGCGGGAAAAGGAGGCAAGGGGCTTTTGGCTGCAAAAACCACGACTGCTAACAAGGACAAAGATAAGGATAAGAAAAGGCCTGTTTCCAGGTCATCCCGTGCCGGAATCCAGTTTCCTGTGGGTCGTATTCATAGACAACTGAAGCAAAGGATCCAAGCAAATGGGCGTGTTGGGGCCACAGCTGCAGTTTACTTGGCCTCCATTCTTGAGTACCTGACAGCCGAAGTTCTGGAGCTTGCTGGAAACGCAAGCAAAGATCTGAAGGTGAAGAGGATCACACCAAGGCATCTGCAGCTTGCTATCAGAGGAGATGAAGAACTTGACACCCTCATTAAGGGAACTATAGCTGGTGGGGGTGTCATCCCTCATATTCACAAGTCACTCATCAACAAGACCTCCAAAGAATGA 588 0.4915 MNGTESWPLQEDVEPIKPYPEAISICPVHPHLAFGVLLPFTPQPLFSLLWLFGSHTLKEMAGKGGKGLLAAKTTTANKDKDKDKKRPVSRSSRAGIQFPVGRIHRQLKQRIQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1295 195 CDD H2A 86 191 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1295 195 Gene3D Histone, subunit A 74 195 IPR009072 GO:0046982
Lele06g1295 195 MobiDBLite consensus disorder prediction 69 91 - -
Lele06g1295 195 SUPERFAMILY Histone-fold 59 172 IPR009072 GO:0046982
Lele06g1295 195 Pfam Core histone H2A/H2B/H3/H4 75 163 IPR007125 GO:0003677
Lele06g1295 195 FunFam Histone H2A 74 195 - -
Lele06g1295 195 MobiDBLite consensus disorder prediction 75 90 - -
Lele06g1295 195 Pfam C-terminus of histone H2A 165 194 IPR032454 -
Lele06g1295 195 PRINTS Histone H2A signature 172 190 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1295 195 PRINTS Histone H2A signature 145 159 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1295 195 PRINTS Histone H2A signature 86 108 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1295 195 PRINTS Histone H2A signature 116 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1295 195 PRINTS Histone H2A signature 131 144 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1295 195 SMART h2a4 75 195 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele06g1295 195 PANTHER HISTONE H2A 80 191 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1295 Lele-ChrLele06 8259444 8261130 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1295 06 8259444 8261130 Lele07g1498 07 9144897 9146607 hybridization
Lele06g1295 06 8259444 8261130 Lele08g1292 08 8224840 8225748 hybridization