Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1288 ATGGGGATCAACTTTGACGGCGATCTCATGAATCTGAAGGACACAGAGCTAAGGTTGGGATTGCCCGGAAGGGACGAGGGAGAAGATAAACGTTCATGCAGCGTCAGGAGCAACAAGAGGCGTTGGCGAGAATCAAGTGAGGACGAGGAATCCTCAGTAACCCAGAACAATGCCTGTAATAACAGTTCTGATGATCAAGATAACGCCCCGCCAGCAAAGGTACAAGTAGTGGGATGGCCACCGATTAGATCTTACAGGAAGAATTGTGTTCAACAACAAAAGAAGGGATCTCAAGAGGGTAGTGATGGGGCTGGAAATATGTATGTGAAAGTGAGCATGGATGGTGCTCCTTATCTGAGGAAGATAGATCTCAAGGTTTACAACAGCTACACACAGCTCCTCAAGGCGTTGCAGAACATGTTCAAGTGCACTTTTGGTGAGTACTCAGAAAGGGAAGGCTACAACGGATCTGAATACGCACCTACTTATGAAGACAAGGATGGAGACTGGATGCTGGTTGGAGATGTTCCGTGGAATATGTTCACGTCATCTTGCAAGAGACTGAGAATCATGAAAGGATCAGAGGCTAAGGGATTGGGTGGCAGTTTATGA 612 0.469 MGINFDGDLMNLKDTELRLGLPGRDEGEDKRSCSVRSNKRRWRESSEDEESSVTQNNACNNSSDDQDNAPPAKVQVVGWPPIRSYRKNCVQQQKKGSQEGSDGAGNMYVKVSMDGAPYLRKIDLKVYNSYTQLLKALQNMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFTSSCKRLRIMKGSEAKGLGGSL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1288 203 MobiDBLite consensus disorder prediction 51 69 - -
Lele06g1288 203 MobiDBLite consensus disorder prediction 19 74 - -
Lele06g1288 203 SUPERFAMILY CAD & PB1 domains 99 192 - -
Lele06g1288 203 ProSiteProfiles PB1 domain profile. 106 193 IPR000270 GO:0005515
Lele06g1288 203 Gene3D - 101 202 - -
Lele06g1288 203 MobiDBLite consensus disorder prediction 19 50 - -
Lele06g1288 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 197 IPR003311 GO:0005634|GO:0006355
Lele06g1288 203 FunFam Auxin-responsive protein 101 203 - -
Lele06g1288 203 Pfam AUX/IAA family 38 200 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1288 Lele-ChrLele06 8208079 8208925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1288 109 199 B3 DNA Binding Superfamily AT2G46530 38.462 4.52e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele06g1288 AUX_IAA 6.9e-63 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1969 13 27165077 27167494 Lele06g1288 06 8208079 8208925 CCT
Lele15g0440 15 2551279 2553657 Lele06g1288 06 8208079 8208925 CCT
Lele16g0464 16 2526832 2529326 Lele06g1288 06 8208079 8208925 CCT
Lele06g1288 06 8208079 8208925 Lele07g1489 07 9090477 9091313 hybridization
Lele06g1288 06 8208079 8208925 Lele08g1284 08 8166182 8167025 hybridization