Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1286 ATGGGTTTCGAGGAAACAGAACTCAGGCTGGGATTGCCCGGAAATAATGGAGGCACCGAACCAGAAGTCGTCAGAAAGAGGGGTTTCTCTGAGACTGAATCAGAGACTGTGGACTTGATGTTGAATCTCTCATCTTCAAAGGAAGCTGCAGATCCATCTGATAACCTCAAGAAGGAGAAGACCCTTCTGCCCTCTGATCTTGCCAAGTCTCGCGCCAAGGCGCAAGTGGTGGGGTGGCCACCAGTGAGATCTTTCAGGAAGAACATACTAAAGAGCAGTACTGGAGAAGAGAAGGAGAAAGGAAGCCCTAATAATGGAAGCTTCGTGAAAGTAAGCATGGATGGAGCTCCTTACCTTCGCAAAGTGGACCTCAAGTTGTACAACACTTACCAAGATCTCTATGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATTGGAAACTGTGGATCCCAAGGAATGAAGGACTTCATGAACGAGAGTAAGCTGATGAATCTCTTGAACAGCTCCGACTATGTCCCAACCTATGAAGACAAAGAAGGCGACTGGATGCTTGTCGGCGACGTCCCTTGGGAGATGTTTGTCGAAGCATGCAAGCGTTTGCGCATCATGAAAGGCAAGGAGGCTATCGGACTTGCTCCGAGAGCCATGGAGAAATGCAAGAACAGAAGCTAG 675 0.4859 MGFEETELRLGLPGNNGGTEPEVVRKRGFSETESETVDLMLNLSSSKEAADPSDNLKKEKTLLPSDLAKSRAKAQVVGWPPVRSFRKNILKSSTGEEKEKGSPNNGSFVKVSMDGAPYLRKVDLKLYNTYQDLYDALAKMFSSFTIGNCGSQGMKDFMNESKLMNLLNSSDYVPTYEDKEGDWMLVGDVPWEMFVEACKRLRIMKGKEAIGLAPRAMEKCKNRS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1286 224 Gene3D - 101 218 - -
Lele06g1286 224 SUPERFAMILY CAD & PB1 domains 102 205 - -
Lele06g1286 224 ProSiteProfiles PB1 domain profile. 106 206 IPR000270 GO:0005515
Lele06g1286 224 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 211 IPR003311 GO:0005634|GO:0006355
Lele06g1286 224 FunFam Auxin-responsive protein 101 216 - -
Lele06g1286 224 Pfam AUX/IAA family 5 215 IPR033389 -
Lele06g1286 224 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1286 Lele-ChrLele06 8198943 8200512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1286 93 214 B3 DNA Binding Superfamily AT4G23980 31.967 5.48e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele06g1286 AUX_IAA 1.9e-79 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1286 06 8198943 8200512 Lele07g1488 07 9080580 9082120 hybridization
Lele06g1286 06 8198943 8200512 Lele08g1282 08 8156090 8157673 hybridization