Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1280 ATGAACGTGACGGAGATCTTTGTTGGATCTGTGGTATACCTTCAACCTACTTTAAAGAAGAAAACTGCAGTTTCAAGAAGCTGGATTCTGCTCGACCGCAATGGCAACGGTACTGTGTTGGATGCCGACAAGTACGCTATTATGCGCCTGGTTGAAATTCACGCAAGAGATCTTCGAATCCTTGATCCGCTGTTATCGTATCCCTCAACCATTTTGGGTAGAGAGAAAGTCATTGTCCTCAATTTAGAGGTGTTACTCAGAGATCCGCTGGATGATGATGTAATTCCTATTGTTGAGCAACTTCAAAGAAGGTTGCCCATAGTGTCTGGTACAGGGCAAGGCCAAGGAGAAGAAGAAGAGACATGTGCTCAAGAAATTGAAGGCGACGAAGAAAATGAATTTCCGTTTGAGTTCCGTGCCTTAGAGGTTGCATTAGAGGCAATTTGTAGTTTTCTTGATGCGCGGACCAGAGAATTAGAGACGGCTGCTTATCCGGCTTTAGATGAGCTCACCTCTAAGATTAGCAGTCGTAACTTGGATAGAGTACGCAAACTGAAAAGTGCAATGACCAGGTTGACAAATAGAGTTCAAAAGGTACTTTCATATGATGTTTGCGCAAGGGTTCGTAGATCGAGCAGAGCAAGTGCAACAACATTTCAAGGGGAGAATGATGTCGAGGAGCTTGAAATGTTACTCGAGCTAGAGCTCTTCCTCAGTTCTGGGACTGTGTGCCTCTCCATATATTCCTTGGTGGGTGCAATATTTGGCATGAACATCCCGTACACCTGGAACGAAGGACACAGTTATATGTTCAAATGGGTGGTAATCTTTACGGGAATAGTCTGTGGATCCTTGTTTTTGTCCAGAGTATCATATGCCCGACGCAAAGGCTTTCAGTATGACGGGGGCGGTTTTCCTGATGCTGAGGCAGATGCTACTGAACTGACGTACGAGGACTACAAGAATACGCAGCTACTAAAAAAAACTCCCTCTCAAAATCCTCACTTTAATGTGAAGGGAATGGTATTTGCACACTCAGATTTTGACATCTTCACAGCTCATCATTACCCCGTCATTGCTATAACTACCCCCCCAACCCCCACTCCTATTTTGCCAATGCTCTTTTCTCTAATCAGAATTATCCGACAGTTACTCTGGGTTCAATTAAGGAAGTGCATATATGACAAAATTACTGATGAGGAATTGGAATGCTGTCCAATATGCAATATTGATTTGGGCTGTACTCCGCTGGAGAAATTGAGGCCAGACCACAGTTTGCAAGATGTAAGATCTAAAATTTTCCCTTTGAAGCAAACAAAGGAAAAGGCACCAGAAGTTGTCCCCCCAGAACCATTACCAGCTAGAAGAAAGGAAAGATCACTTTCATCTTTGGTTGTTAGCACTCCCAGAGTATCAACACAGACAACCATGACAGGCAGAAGAACAAAGCCTACAAGAAAGGCTAGTGCTCGCTCCACTAGTTTTTCCGTTGAAAAAACCGTTATAAAAGAGGAAGATTCAGTGGAAGATCATCCAGAGAGTTCAAGCTCCCCTGATACCTCCAACAAGAACTCGTGTCCTCGTGATGCAAGCCAATCTGTTCCCAATAAGGAGAAAAATAATGGGGCTGAACCTTGGGACGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTGGTGGAGGTAGCAAGCAGAAGCAAATCTTTCAAGTCCAATGTGCAAGGATGTGATGCTAAACAAGAACCTACTCAAATAAATGAGAATGATTCTCAAGTACAAAAACCCAAAATTAAGGACAACAGACGAAAGTCAAAAGTTGAGGATAAAAAGATCGTAACAGAGCCTGCTTCTCCAGATACTGAGAAACCAAATAAATCGCGCAGAAATGGCCGAAAAAAGGAACCTGTTGTGGGTGAATCAAGCATATCACCCCAAGCTGTGCTGGATGCAAACAGTGCTAAAATGAAAGATAGAAATGGTCCAATATGGTTCTCCTTAGTAGCCTCTGAAGACCAGGACAAAGATGCGCCAATACCCCAAATTCCTGCAGGTTACTTAAGAATAAATTCATGTCATCTGCTCTTGTGTAAACCACAAGGTGTCGCATGTTGGTCTGATAAATACTTATGCTATGTTGAGATTAAATGCATGGGACAACCAGTGGTCCCTACATTGCAACTTTATAACTTGGTTGACTTATGGCTGCAAACAACATCGACATCACAGAGAATCCCAGCGGCCGTTGGAGCATCAGCAAAGGATTTTGTTATGGTTCTGACCTATGCTCGCAAGCAGGCCCCGCCTTCTTGA 2310 0.4333 MNVTEIFVGSVVYLQPTLKKKTAVSRSWILLDRNGNGTVLDADKYAIMRLVEIHARDLRILDPLLSYPSTILGREKVIVLNLEVLLRDPLDDDVIPIVEQLQRRLPIVSGTGQGQGEEEETCAQEIEGDEENEFPFEFRALEVALEAICSFLDARTRELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVLSYDVCARVRRSSRASATTFQGENDVEELEMLLELELFLSSGTVCLSIYSLVGAIFGMNIPYTWNEGHSYMFKWVVIFTGIVCGSLFLSRVSYARRKGFQYDGGGFPDAEADATELTYEDYKNTQLLKKTPSQNPHFNVKGMVFAHSDFDIFTAHHYPVIAITTPPTPTPILPMLFSLIRIIRQLLWVQLRKCIYDKITDEELECCPICNIDLGCTPLEKLRPDHSLQDVRSKIFPLKQTKEKAPEVVPPEPLPARRKERSLSSLVVSTPRVSTQTTMTGRRTKPTRKASARSTSFSVEKTVIKEEDSVEDHPESSSSPDTSNKNSCPRDASQSVPNKEKNNGAEPWDAKLDLWKPLNCLVEVASRSKSFKSNVQGCDAKQEPTQINENDSQVQKPKIKDNRRKSKVEDKKIVTEPASPDTEKPNKSRRNGRKKEPVVGESSISPQAVLDANSAKMKDRNGPIWFSLVASEDQDKDAPIPQIPAGYLRINSCHLLLCKPQGVACWSDKYLCYVEIKCMGQPVVPTLQLYNLVDLWLQTTSTSQRIPAAVGASAKDFVMVLTYARKQAPPS 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1280 769 MobiDBLite consensus disorder prediction 437 546 - -
Lele06g1280 769 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 237 287 IPR045863 -
Lele06g1280 769 MobiDBLite consensus disorder prediction 569 644 - -
Lele06g1280 769 Gene3D Magnesium transport protein CorA, transmembrane region 98 243 - -
Lele06g1280 769 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 712 767 IPR044807 GO:0004842
Lele06g1280 769 MobiDBLite consensus disorder prediction 461 497 - -
Lele06g1280 769 MobiDBLite consensus disorder prediction 592 635 - -
Lele06g1280 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 450 IPR013083 -
Lele06g1280 769 CDD Mrs2_Mfm1p-like 28 297 IPR039204 -
Lele06g1280 769 MobiDBLite consensus disorder prediction 514 539 - -
Lele06g1280 769 MobiDBLite consensus disorder prediction 498 513 - -
Lele06g1280 769 MobiDBLite consensus disorder prediction 569 591 - -
Lele06g1280 769 Gene3D - 12 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1280 Lele-ChrLele06 8155041 8165261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1280 17 274 MRS2 Gene Family AT5G64560 53.125 1.10e-101 317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1280 06 8155041 8165261 Lele13g1952 13 27056538 27058744 CCT
Lele06g1280 06 8155041 8165261 Lele14g1881 14 25382179 25386665 CCT
Lele06g1280 06 8155041 8165261 Lele15g0458 15 2657326 2659534 CCT
Lele06g1280 06 8155041 8165261 Lele16g0480 16 2627068 2631465 CCT
Lele06g1280 06 8155041 8165261 Lele07g1482 07 9040489 9043865 hybridization
Lele06g1280 06 8155041 8165261 Lele08g1274 08 8106148 8117740 hybridization