Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1248 ATGCCTTGGCCGTCAACGCAGCAACAACGCCCAGATTGGGAGTTCTGGCAGGAGCCCTCTGATGCGTTCTTGGTCTCTTCATCAAGCAACCAAGTTCATGAAGACCCTTCCCACGATTATCTTTGCTTCGATATGATTTACAAGCAGGCAAATCAACTGCCTGTGACTTGGGAAGCCATGGAAGCCGAGATTGTCAAGGAAAAAGCATACATAGGGGTGAGGAAGAGACCTTGGGGGAAATTTGCAGCTGAGATCAGAGACACCACCAGGAATGGCACCAGAGTTTGGCTGGGAACGTTCGACACTGCAGAGGAGGCTGCTTTAGCTTATGACCAAGCTGCATTCACCATGAGAGGCTACACCGCTGTTCTTAATTTTCCGGTGGACAAGGTGAAGAAGTCTCTGCAAGAAATCAAGTATGGTTGCCGCAAAGGGTGTTCGCCCGCTTTAGCCCTAAAAGAGAGGCACTACATCCAAAGAAAAATGTCGTCAAAGGCTAAGAAGGACAAAGCCAAACAGCAATCAGAGGTGGTGGTGCTTGAGGACTTGGGTGTTGAATATCTGGAGCAACTTCTCAGCATATCTGATCAAAATGCAAGCCCTAGCTAG 609 0.4877 MPWPSTQQQRPDWEFWQEPSDAFLVSSSSNQVHEDPSHDYLCFDMIYKQANQLPVTWEAMEAEIVKEKAYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDTAEEAALAYDQAAFTMRGYTAVLNFPVDKVKKSLQEIKYGCRKGCSPALALKERHYIQRKMSSKAKKDKAKQQSEVVVLEDLGVEYLEQLLSISDQNASPS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1248 202 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Lele06g1248 202 FunFam Ethylene-responsive transcription factor 2 68 129 - -
Lele06g1248 202 Pfam AP2 domain 70 119 IPR001471 GO:0003700|GO:0006355
Lele06g1248 202 Gene3D AP2/ERF domain 68 129 IPR036955 GO:0003700|GO:0006355
Lele06g1248 202 CDD AP2 70 129 IPR001471 GO:0003700|GO:0006355
Lele06g1248 202 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Lele06g1248 202 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Lele06g1248 202 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Lele06g1248 202 PANTHER DNA-BINDING DOMAIN 48 196 IPR044808 GO:0003700|GO:0009873
Lele06g1248 202 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1248 Lele-ChrLele06 7926072 7926680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1248 33 200 AP2-EREBP Transcription Factor Family AT3G23240 48.603 6.44e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele06g1248 AP2 2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1248 06 7926072 7926680 Lele06g1248 06 7926072 7926680 ECH
Lele06g1248 06 7926072 7926680 Lele07g1449 07 8779811 8780557 hybridization
Lele06g1248 06 7926072 7926680 Lele08g1239 08 7868554 7869162 hybridization